PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

485840

Common Name

ARALYDRAFT_485840

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 297aa MW: 33276.8 Da PI: 10.2761

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
485840	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	37	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ 485840 37 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTQTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 120 5***********************************88777777788999*************99997......46**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-20	35	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MENGDSNQEN PKSLNHDESS KKPSASSVVV DRLKRDEWSE GAVSSLLEAY ESKWVLRNRA 60 KLKGQDWEDV ARHVSSRATQ TKSPKTQTQC KNKIESMKKR YRSESATADG SSWPLYPRLD 120 HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP SPVVAHPPQI SYGSNGVGKI PKEDGFKPEQ 180 KPEKATEMDT DSSTPVVKTK VRGKKVKRRY KEEKKEIAGS IRWLAEVVMR SERARMETMK 240 EIERMRAEAE AKRGEMDLKR TEIMANTQLE IARLFAVAAS SGQNKGVDSS LRIGRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	485840

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084391	0.0	AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBank	AY140041	0.0	AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBank	BT006322	0.0	BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881773.1	0.0	trihelix transcription factor ASIL1
TrEMBL	D7LUT4	0.0	D7LUT4_ARALL; Transcription factor
STRING	fgenesh2_kg.5__1832__AT3G54390.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-161	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	485840
Entrez Gene	9314043