PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485418
Common NameARALYDRAFT_485418
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 447aa    MW: 47469.9 Da    PI: 10.0272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485418genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055779123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C+k F r  nL+ H r H
   485418 57 FVCEICNKGFQRDQNLQLHRRGH 79
             89*******************88 PP
2zf-C2H211.40.00098133155123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC +C+k +  +s+ k H + +
   485418 133 WKCDKCSKKYAVQSDWKAHSKIC 155
              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.13E-75679No hitNo description
Gene3DG3DSA:3.30.160.601.4E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PfamPF121716.9E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035526098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-7128153No hitNo description
SMARTSM00355150133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSIL STGKSTGKKK RNLPGMPDPE SEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQKSN KEVKKKVYVC PEVSCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTKEY KCDCGTLFSR RDSFITHRAF  180
CDALAEESAR SHNQSKKRNP DILTRQKPVP DPIPAPVDTD QSAKIISSST LTIKQSESPK  240
TPPEIVQEAP KPTGVNVVTR NGVFEGLFES SSASPSIYTT SSSSPSLFAP SSSIEPISLG  300
LSTSHGSSFL GSNRFQPQPA MSATALLQKA AQMGASSSGG SLLRGLGIVS STSTSMDAIV  360
PHGLGLGLPC GGESSSGLKE LMMGNSSVFG PKQTTLDFLG LGRAVGNGNG PSNGLSALVG  420
GSSGIDMAKT FGSGEFSGKD ISRRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35129190364Zinc finger protein JACKDAW
5b3h_F5e-35129190364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap485418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269330.0AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08.
GenBankBT0149470.0BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds.
GenBankBT0158360.0BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881653.10.0protein indeterminate-domain 2
SwissprotQ9SCQ60.0IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLD7LTH60.0D7LTH6_ARALL; ATIDD2-DOMAIN 2
STRINGfgenesh2_kg.5__1410__AT3G50700.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]