PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484242
Common NameARALYDRAFT_484242, WRKY3
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 511aa    MW: 55836.8 Da    PI: 8.7804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34247303259
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+Hnhe
  484242 247 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHNHE 303
             8****************************************.***************7 PP
2WRKY105.52.8e-33411469159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C v+k+ver+a+dpk+v++tYeg+Hnh+
  484242 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAANDPKAVVTTYEGKHNHD 469
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-30238305IPR003657WRKY domain
PROSITE profilePS5081124.202241305IPR003657WRKY domain
SuperFamilySSF1182904.18E-26244305IPR003657WRKY domain
SMARTSM007742.3E-37246304IPR003657WRKY domain
PfamPF031065.7E-26247303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-36396471IPR003657WRKY domain
SuperFamilySSF1182901.96E-29403471IPR003657WRKY domain
PROSITE profilePS5081137.275406471IPR003657WRKY domain
SMARTSM007744.8E-38411470IPR003657WRKY domain
PfamPF031061.2E-25412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAEKEEKEPS KLKSSTGVTR PTIALPPRPF SEMFFSGGVG FSPGPMTLVS NLFSDPDEIK  60
SFSQLLAGAM ASPAAAAVAA AAVVASAAHH QTPVSSVGDG GGSGGDVDPR FKQSRPTGLM  120
ITQPPGMFTV PPGLSPATLL DSPSFFGLFS PLQGAFGMTH QQALAQVTAQ AVQGNNVHMQ  180
QSQSEYPSST QQQQQQTSLT EVPSFSSGPR SQIRASVQEK LQGQRDTSEI SVFEHRSQPQ  240
NADKPADDGY NWRKYGQKQV KGSDFPRSYY KCTHPACPVK KKVERSLDGQ VTEIIYKGQH  300
NHELPQKRGN NNGNSKSSDI ATQFQTSNSS LNKSKRDQET SQVTTTEQMS EASDSEEVGN  360
TETTVGEKHE DEPDPKRRNT EVRVSEPVAS SHRTVTEPRI IVQTKSEVDL LDDGYRWRKY  420
GQKVVKGNPY PRSYYKCTTP DCGVRKHVER AANDPKAVVT TYEGKHNHDV PAGRTSSHQL  480
RPNNQPNTST VNFNQQQPVA RLRLKEEQII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-43247472878Probable WRKY transcription factor 4
2lex_A4e-43247472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap484242
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880320.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLD7LQG60.0D7LQG6_ARALL; WRKY DNA-binding protein 3
STRINGfgenesh2_kg.5__234__AT2G03340.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]