PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

484166

Common Name

ARALYDRAFT_484166

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 319aa MW: 35642.9 Da PI: 8.8017

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
484166	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.1	1.9e-32	90	145	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e e 484166 90 IKYKECLKNHAATMGGNAIDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEGE 145 79***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.3E-29	90	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-26	90	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-31	91	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.735	92	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.25E-21	216	288	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-31	221	289	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.956	225	289	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	2.6E-26	227	283	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEIASQDDPI PINTSYGNSG GGHGNMIHHP HHHHANSAPS SLNMTTSNPL LVSSNGNGLG 60 KNHEHSHHHH VGYNIMVSNN NIKKEKPVVI KYKECLKNHA ATMGGNAIDG CGEFMPSGEE 120 GSIEALTCSA CNCHRNFHRR EIEGEQKTFF SPYLNHHQLP PPQRKLMFHH KMIKSPLPQQ 180 MIMPVGVTTA GSNSESEDLM EEDAGGSLTF RQPPPPPPSY SYGHNQKKRF RTKFTQEQKE 240 KMMSFAERVG WKIQRQEESV VQQLCQEIGI RRRVLKVWMH NNKHNLSKKS NNNNVNNNVE 300 LSAGNNNATT ENFASINP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-23	228	285	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	484166

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004136	0.0	AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBank	AY773834	0.0	AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881091.1	0.0	zinc-finger homeodomain protein 3
Swissprot	O64722	0.0	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	D7LQ45	0.0	D7LQ45_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__158__AT2G02540.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-169	homeobox protein 21

Link Out ? help Back to Top
Phytozome	484166
Entrez Gene	9312891

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]