PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483883
Common NameARALYDRAFT_483883
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 900aa    MW: 100306 Da    PI: 6.1231
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483883genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1352.4e-42121198178
             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
             +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g+ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  483883 121 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSAIVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNP 198
             6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-33119183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.787119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39120200IPR004333Transcription factor, SBP-box
PfamPF031107.0E-31122195IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.48E-8692794IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-8693794IPR020683Ankyrin repeat-containing domain
CDDcd002041.21E-9695791No hitNo description
PROSITE profilePS502978.534695791IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MEGEEAQHFY GFRAVDLRSV GKKSVEWDLN DWKWDGDLFL ATQLNPAASE TTGRQFLPLG  60
NSSNSSSSCS DEGNNTNMVE KKRRAIAIQG DSNAAGGLTL KLGDNACHLN AAKKTKFGAA  120
VCQVENCEAD LSKVKDYHRR HKVCEMHSKA TSAIVGGILQ RFCQQCSRFH LLQEFDEGKR  180
SCRRRLAGHN KRRRKTNPEP GPNGNPSDDQ SSNYLLISLL KILSNMHNHT GDQDLMSHLL  240
KSLVSHAGEQ LGKNLVELLL QGGSQGSLNI GNSALLGIEQ APQEDLKQLS VNVPRQDGTA  300
TETRSEKQVK MNDFDLNDIY IDSDDTDIER SPPPTNPATS SLDYPSWIHQ SSPPQTSRNS  360
DSASDQSPSS SSEDAQMRTG RIVFKLFGKE PNEFPIVLRG QILDWLSHSP TDMESYIRPG  420
CIVLTIYLRQ AETAWEELSD DLGFSLRKLL DLSDDPLWTT GWIYVRVQNQ LAFVYNGQVV  480
VGTSLPLKSR DYSHIINVKP LAIAATGKAQ FTVKGINLRR RGTRLLCAVE GKYLIQETTH  540
DSTTGENDDL KENNEIVECV NFSCDMPITS GRGYMEIEDQ GLSSSFFPFL VVEDDDVCSE  600
IRILETTLEF TGTDSAKQAM DFIHEIGWLL HRSKLGESDP NPDVFPLIRF QWLIEFSMDR  660
EWCAVIRKLL NMFFDGAVGE FSSSSNATLS ELCLLHRAVR KNSKPMVEML LRYVPKKQRN  720
SLFRPDAAGP AGLTPLHIAA GKDGSEDVLD ALTEDPAMVG IEAWKTSRDS TGFTPEDYAR  780
LRGHFSYIHL IQRKINKKST TEDHVVVNIP VSFSDREQKE PKSGPMASAL EINQLPCKLC  840
DHKLVYGTTR RSVAYRPAML SMVAIAAVCV CVALLFKSCP EVLYVFQPFR WELLDYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32118195784squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap483883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116290.0AJ011629.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 1.
GenBankAK2302690.0AK230269.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 1, complete cds, clone: RAFL23-28-L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883222.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLD7LFY40.0D7LFY4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2943__AT2G47070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]