PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483623
Common NameARALYDRAFT_483623
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 291aa    MW: 31479.5 Da    PI: 4.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483623genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1895144255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  483623  95 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 144
             69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-3895158IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2195152IPR016177DNA-binding domain
PfamPF008471.1E-1295144IPR001471AP2/ERF domain
PROSITE profilePS5103223.22295152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3195153IPR001471AP2/ERF domain
CDDcd000182.58E-3196154No hitNo description
PRINTSPR003672.5E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERHINIESS VSQVTFISSA IFAVSSSSVS AAASLSSSPT TSSSSSSSST NSNFIAEDNS  60
KRKATRRSLA SVEDDDRNDG GGKRRKTSGG DKHPTYRGVR MRSWGKWVSE IREPRKKSRI  120
WLGTYPTAEM AARAHDVAAL AIKGTTAYLN FPELSGELPR PVTNSPKDIQ AAASLAAVNW  180
QDPVNDVSNS EVAELAEAEP SRAVVAQLFS SDTSTATTQS QESSEASCAS TSCTDKDSEE  240
EKLFDLPDLF TDENEMMIRN DAFCYYSSTW QLCGADAGFR LEEPFFCLND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1790153973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap483623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023880.0AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAK2296160.0AK229616.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-54-M23.
GenBankBT0085640.0BT008564.1 Arabidopsis thaliana clone U50797 putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankBT0086770.0BT008677.1 Arabidopsis thaliana clone RAFL19-54-M23 (R50797) putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880148.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-151ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7LBU10.0D7LBU1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2683__AT2G44940.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-125ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]