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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 483604 | ||||||||
Common Name | ARALYDRAFT_483604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 219aa MW: 24647.1 Da PI: 8.9695 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.9 | 1.9e-32 | 144 | 201 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh 483604 144 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-34 | 129 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 136 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 139 | 201 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 144 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-25 | 145 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEGGGRRVFN NYDLQQVTSS STTVQENMNF LVPFEETNVL TFFSSSSSSS LSSPSFPIHN 60 SSSTTTTHAP LGFSNNLQGG GPLGSKVVND DQENFRGGTN TDAHSNSWWR SNSGSGDMKN 120 KVKIRRKLRE PRFCFQTKSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR 180 VERLSEDCRM VITTYEGRHN HIPSDDSTSP DHDCLSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 135 | 201 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 135 | 201 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | KIRRKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 483604 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF404857 | 0.0 | AF404857.1 Arabidopsis thaliana WRKY transcription factor 12 (WRKY12) mRNA, complete cds. | |||
GenBank | BT028992 | 0.0 | BT028992.1 Arabidopsis thaliana At2g44745 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881979.1 | 1e-162 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 1e-161 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | D7LBR5 | 1e-161 | D7LBR5_ARALL; WRKY family transcription factor | ||||
STRING | fgenesh2_kg.4__2664__AT2G44745.1 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6045 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-132 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | 483604 |
Entrez Gene | 9318045 |
Publications ? help Back to Top | |||
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