PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 483602 | ||||||||
Common Name | ARALYDRAFT_483602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 392aa MW: 42755 Da PI: 9.6152 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.8 | 2.2e-21 | 67 | 158 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+ +e aLi+a+r+++ +l+rg+lk+++Weev++++ + ++++++qC++k+e+l+kry+ + +++++ ++ s++++f+++ea 483602 67 CWSLEEAIALIDAYRDKWYALNRGNLKANHWEEVAEAVgvncPDVTLKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRMEA 158 7************************************999999*******************************977999**********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.2E-19 | 66 | 159 | No hit | No description |
SMART | SM00595 | 2.0E-16 | 75 | 164 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MSDPDSPMNH DPIPDPSPVR IQSSPLPPPL SSSAQDDAST EPASVTDLKS ASIPAASKNS 60 RRLPPPCWSL EEAIALIDAY RDKWYALNRG NLKANHWEEV AEAVGVNCPD VTLKKTAVQC 120 RHKMEKLRKR YRTEIQRARS VPVARFISSW VHFKRMEAME NRPEIKQGNE SGDEDHDDAN 180 YTARYQIKNG GGGGGGLVAR TTPRFFNRNG TAGSGGGGGS SSSGGIRIRI PTGVSIAQPG 240 ARFPGKIDQK YTASPSSGLS SNPRPGRGIG AGGPNYGAKV VRIPEGEERG GGKRGREMMM 300 KTEEEDDNDP MVEIASAIKQ LGDTLVRTEQ TRMEMTREIE AMRMDTEMKR TKMILESQQR 360 IVEAFAKSLS DNTEEDKKKK ARRMSSLAAD S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 483602 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003672 | 0.0 | AC003672.3 Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881977.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | D7LLP9 | 0.0 | D7LLP9_ARALL; Transcription factor | ||||
STRING | fgenesh2_kg.4__2662__AT2G44730.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8963 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | 483602 |
Entrez Gene | 9316199 |