PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483330
Common NameARALYDRAFT_483330
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 322aa    MW: 35764.3 Da    PI: 5.9985
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483330genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-10188231548
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
             kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  483330 188 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 231
             8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13184248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622186238IPR004827Basic-leucine zipper domain
PfamPF001703.9E-9188232IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-13188239No hitNo description
SuperFamilySSF579594.34E-11188242No hitNo description
CDDcd147033.49E-23189239No hitNo description
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAQLPPKIPN MTQHWPDFSS QKLSPFTTPT ATAIAAATTA VQNPSWVDEF LDFSASRRGN  60
HRRSISDSIT FLEAPTVSIE DHHFDRFDDE QFMSMFTDED GLHNNPSHIN NNNNNVGPTG  120
SSSNTSTPSN SINDDNKELP PADHNMNNNN NNNNNDEVQS QCKIEPEDGT ASNNNSGDSS  180
GNRILDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL  240
LLNVDNSALK QRIAALSQDK IFKDAHQEAL KREIERLRQV YNQQSLKTME NANHLPATGA  300
GATSAVDIKP SIEQEQLLNV S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746570.0AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884468.10.0basic leucine zipper 34
SwissprotF4IN230.0BZP34_ARATH; Basic leucine zipper 34
TrEMBLD7LI530.0D7LI53_ARALL; BZIP transcription factor family protein
STRINGfgenesh2_kg.4__2390__AT2G42380.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-164bZIP family protein
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]