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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 483119 | ||||||||
Common Name | ARALYDRAFT_483119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 369aa MW: 40678.8 Da PI: 6.5675 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.9 | 1.4e-10 | 150 | 207 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se 483119 150 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 207 9*****************************************9999887776666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.3E-17 | 146 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.622 | 148 | 211 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.5E-10 | 150 | 205 | No hit | No description |
Pfam | PF00170 | 1.4E-9 | 150 | 208 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.97E-10 | 150 | 201 | No hit | No description |
CDD | cd14703 | 4.40E-22 | 151 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEDPSNPKSN QSNLSQCPPL ATAPTPAPFR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE 60 LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS ADNGGAEAGN SRPRHRHSLS 120 VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV 180 QTLQTEATTL SAQLSLFQRD TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK 240 FATGEVSPAD AYNLGMAHMQ YQHQPQQSFF QHHQQQTDAQ NLQQMTHQFH LFQPNNNQNP 300 NSSSRSNPPT AHQLMHHATS NAPAQSHSYS EAMHEDPLGR LQGLDISSCG RGSNFGRSDT 360 VSESSSTM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 483119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074269 | 0.0 | AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. | |||
GenBank | AY096746 | 0.0 | AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881732.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | O22873 | 0.0 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | D7LF63 | 0.0 | D7LF63_ARALL; BZIP transcription factor family protein | ||||
STRING | fgenesh2_kg.4__2179__AT2G40620.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 483119 |
Entrez Gene | 9317798 |
Publications ? help Back to Top | |||
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