PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482845 | ||||||||
Common Name | ARALYDRAFT_482845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27373.3 Da PI: 8.1806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 69 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p++ +g ++kr +lg+f ta eAa a+++a+ ++g 482845 69 CRFRGVRQRV-WGKWVAEIREPVShRGanssRSKRLWLGTFATAAEAALAYDRAASVMYG 127 689*****99.**********888777877555*********************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.52E-19 | 69 | 137 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 69 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 70 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 70 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.43 | 70 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-19 | 70 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEKEDNGSKQ SSSASVVSSR RRRRRVVEPV EATLQRWEEE GLDKARRVQA KGSKKGCMRG 60 KGGPENPVCR FRGVRQRVWG KWVAEIREPV SHRGANSSRS KRLWLGTFAT AAEAALAYDR 120 AASVMYGPYA RLNFPEDLGG EMKKDEEAET SGGYWLETEK SGHGVIETKD RKDYVVYNED 180 AIELGHDKTE NPINENPSVK SEENYSFERF KLENGLLYNE PQGSSYHQGG GFDSYLEFFR 240 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 71 | 135 | 6 | 63 | ATERF1 |
3gcc_A | 2e-15 | 71 | 135 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 24 | RRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00298 | DAP | Transfer from AT2G38340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482845 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004683 | 0.0 | AC004683.3 Arabidopsis thaliana chromosome 2 clone T19C21 map ve018, complete sequence. | |||
GenBank | AY072421 | 0.0 | AY072421.1 Arabidopsis thaliana DREB-like AP2 domain transcription factor (At2g38340) mRNA, complete cds. | |||
GenBank | BT006276 | 0.0 | BT006276.1 Arabidopsis thaliana At2g38340 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882755.1 | 1e-178 | dehydration-responsive element-binding protein 2E | ||||
Refseq | XP_020882756.1 | 1e-178 | dehydration-responsive element-binding protein 2E | ||||
Swissprot | O80917 | 1e-137 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | D7LLJ0 | 1e-177 | D7LLJ0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1905__AT2G38340.1 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14249 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 1e-132 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 482845 |
Entrez Gene | 9315809 |
Publications ? help Back to Top | |||
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