PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482683 | ||||||||
Common Name | ARALYDRAFT_482683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 185aa MW: 19936.7 Da PI: 7.0287 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.4 | 2.5e-34 | 41 | 137 | 6 | 108 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasal 108 r++++hTkv+gR RRv ++a++aar+F+L++eLG+++d++tieWLl qa+p+i+++tg+++++ s++ ++ + s ++ + +a+ + ++q+s++++l 482683 41 ARSKDRHTKVEGRSRRVMMPALVAARIFQLTRELGHKTDGETIEWLLSQAEPSIIAATGSGTKPISNSVGVAAVDS------SSPMMFAMMQTQTQESPSCTL 137 599*********************************************************9999866622222222......234556666666666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-27 | 42 | 119 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.639 | 43 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MIFQKLCTNE SNLNAIASKS RFQTQIGVSK SSFGGCGRIS ARSKDRHTKV EGRSRRVMMP 60 ALVAARIFQL TRELGHKTDG ETIEWLLSQA EPSIIAATGS GTKPISNSVG VAAVDSSSPM 120 MFAMMQTQTQ ESPSCTLDLC QPIGTQYPVN GYSHMPFTAM LLQPMTTAAD SDVEIAAEEE 180 PHHQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482683 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006922 | 1e-162 | AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence. | |||
GenBank | BT010700 | 1e-162 | BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | BT011504 | 1e-162 | BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-162 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883892.1 | 1e-136 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 5e-77 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | D7LJA4 | 1e-135 | D7LJA4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1743__AT2G37000.1 | 1e-136 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-79 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 482683 |
Entrez Gene | 9317551 |