PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482564 | ||||||||
Common Name | ARALYDRAFT_482564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 672aa MW: 73365.2 Da PI: 6.8524 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 396 | 433 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + 482564 396 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 433 554459******************************88 PP | |||||||
2 | BELL | 121.7 | 3.1e-39 | 255 | 326 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi 482564 255 ERQEIQMKKAKLNNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 326 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.0E-82 | 175 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 1.0E-46 | 181 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 374 | 437 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 377 | 441 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.46E-12 | 377 | 437 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 378 | 444 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-29 | 380 | 444 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 394 | 433 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNNNSN TNNNNSFVFL 60 DSHAPQPNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYGSH QVDPTHQQAA 120 CETPRAQQGL SLTLSSQQQQ QQQHHQQHQP IHVGFGSGPG EDIRVGSGST GSGVTNGIAN 180 LVSSKYLKAA QELLDEVVNA DSDDMNAKSQ LFSSKKGSSG NDKAVGESSA GAGGEGSGGG 240 GEAAGKRTVE LGTAERQEIQ MKKAKLNNML HEVEQRYRQY HQQMQMVISS FEQAAGIGSA 300 KSYTSLALKT ISRQFRCLKE AIAGQIKAAN KSLGEEDSVS GVGRFEGSRL KFVDHHLRQQ 360 RALQQLGMIQ HPSNNAWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR 420 SQVSNWFINA RVRLWKPMVE EMYMEEMKEQ GKNMGSMEKT PLDQSNEDSA SKSTSNQEKS 480 PMADTNFHMN PNHNGDLEGV TGMQGSPKRL RTSDETMMQP INADFSSNEK LTMKILEERQ 540 GIRSDGGYPF MGNFGQYQMD EMSRFDVVSD QELMAQRYSG NNNGVSLTLG LPHCDSLSST 600 HHQGFMQTHH GIPIGRRVKI GETEEYGAAT INGGSSATTA HSSAAAAAAY NGMNIQNQKR 660 YVAQLLPDFV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 383 | 441 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 383 | 441 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 383 | 440 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 383 | 440 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482564 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881420.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_020883700.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | D7LIM1 | 0.0 | D7LIM1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1624__AT2G35940.3 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | 482564 |
Entrez Gene | 9317486 |
Publications ? help Back to Top | |||
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