PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482512
Common NameARALYDRAFT_482512
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 426aa    MW: 45285.9 Da    PI: 6.0164
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482512genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.88.6e-22319381163
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
             ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN+ L+ e+++lk ++++l +e+
  482512 319 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELSAEN 381
             689********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-281103IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.1E-14142180No hitNo description
PfamPF165961.3E-20207288No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-17312378No hitNo description
SMARTSM003382.7E-19319383IPR004827Basic-leucine zipper domain
PfamPF001701.6E-19320381IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162321384IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11322377No hitNo description
CDDcd147022.32E-24324374No hitNo description
PROSITE patternPS000360326341IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MASNETEKSS KEKEPKTPPS SSAAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV  60
ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP SMPPGSYPYS PYAMPSPNGM  120
TEVSGNTTGG TEGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK  180
RHDPFWTYAT SLDNIHSIIA LRLSEFEGSD GNSQNDSGSG LDGKDAEAAS ENGGSANGPR  240
NGSAGTPILP VSQTVPIMPM TAAGVPGPPT NLNIGMDYWG APTSAAIPGM HGKVSTPVPG  300
VVAPGSRDGG HSQPWLQDDR ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN  360
TNLRAEINKL KSQCEELSAE NTSLKDQLSL FPPLEGISMD NDHQEPDTNQ TGAAERKVDS  420
YKDTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335341RRSRLRK
2335342RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap482512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884547.10.0bZIP transcription factor 16
RefseqXP_020884548.10.0bZIP transcription factor 16
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLD7LHX20.0D7LHX2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1572__AT2G35530.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]