PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482446
Common NameARALYDRAFT_482446
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 417aa    MW: 45075.4 Da    PI: 6.1819
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482446genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31216274259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  482446 216 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 274
             699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31209276IPR003657WRKY domain
PROSITE profilePS5081133.109210276IPR003657WRKY domain
SuperFamilySSF1182902.62E-26213276IPR003657WRKY domain
SMARTSM007741.4E-37215275IPR003657WRKY domain
PfamPF031068.5E-26217274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIGSGHM SSSPGPPEGP SPSSLSPPPT SDLHVDFPSA AASTYCLTNP  60
FGDPFVSMTD PLIHLPANSG YLSGAGDNKS NNSFAIFPKV FEDDHIKSQC SGFPRIRITQ  120
SNIIHDASTC NSPAIASAAA AAASPWGMIN VDTTNSPRNC LLVDNNNNTS SSSQIQISSF  180
PRNLGIKRRK SQAKKVVCLP APAAMNSRSS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR  240
CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRSSS SSSSLNPSSK  300
SSTAAATSTS PSSRVSHDNN TKNEPNNSHF PSSSTLPPYV AAAVKEENLE ERQENMEFDY  360
NDVEDTYRPE LLREFQHQPE DFFADLDELE GDSLTKTTIP DVFSDFFDSS SSSRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25190277280Disease resistance protein RRS1
5w3x_D1e-25190277280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap482446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048630.0AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBankBT0292390.0BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883018.10.0probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLD7LHP70.0D7LHP7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1506__AT2G34830.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.10.0WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]