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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482066 | ||||||||
Common Name | ARALYDRAFT_482066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 389aa MW: 43685.5 Da PI: 6.358 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33 | 1.3e-10 | 201 | 259 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ 482066 201 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 259 9********************************************99998887777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-15 | 197 | 261 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 199 | 262 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-11 | 201 | 255 | No hit | No description |
SuperFamily | SSF57959 | 1.97E-10 | 201 | 252 | No hit | No description |
Pfam | PF00170 | 6.4E-9 | 201 | 253 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.69E-22 | 202 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDKEKSPAPP CGGLPPPSPS GRCPAFSEAG PIGHGSDANR MSHDMSRMLD NPPKKIGHRR 60 AHSEILTLPD DLSFDSDLGV VGNAADGASF SDETEEDLLS MYLDMDKFNS SATSSAQVGE 120 PSGTAWKNES MMQTDSTSNP QNTLNSFGER PRIRHQHSQS MDGSMNINEM LMSGNEDDST 180 IDAKKSMSAT KLAELALIDP KRAKRIWANR QSAARSKERK TRYIFELERK VQTLQTEATT 240 LSAQLTLLQR DTNGLTVENN ELKLRLQTME QQVHLQDELN EALKEEIQHL KVLTGQVAPS 300 TLNYGSFGSN QQFYSNNQSM QTILAAKQFQ QLQIHSQKQQ QQQQQQHQQQ QQYQFQQQQM 360 QQLMQQRIQQ QEQQNGVRLK PSQPQKES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317087 | 0.0 | AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20. | |||
GenBank | AY057534 | 0.0 | AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds. | |||
GenBank | AY113058 | 0.0 | AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884899.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_020884900.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_020884901.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_020884902.1 | 0.0 | probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 0.0 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | D7LDK3 | 0.0 | D7LDK3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1126__AT2G31370.4 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2445 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31370.5 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 482066 |
Entrez Gene | 9315391 |
Publications ? help Back to Top | |||
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