PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482049
Common NameARALYDRAFT_482049
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 451aa    MW: 50460.5 Da    PI: 5.7384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482049genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10244285854
             HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
              Er RR + N++f+ L+ l+P++     +K   a+i+ +A++YIk+L
  482049 244 TERERRVHFNDRFFDLKNLIPNP-----TKIGRASIVGEAIDYIKEL 285
             6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.91E-10234290No hitNo description
Gene3DG3DSA:4.10.280.101.8E-11234296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-13235303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.062236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-7242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-8244285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGCFDPNTSA EVTVESSFSQ SEQPPPPPQV LVAGSTSNSN CSVEVEELSE FHLSPQDCPQ  60
ASSTPLQFHI NPPPPPPPPC DQFHNNLIHQ MASHQQHSSW ENGYQDFVNL GPNSATTPDL  120
LSLLHLPRWS LPPNHHPSSM LPNSSISFSD IMSSSSAAAV MYDPLFHLNF PMQPRDQNQL  180
RNGSCLLGVE DQIQMDANGG VNVMYFEGAN NNNNNGGFEN EILEFNNGVT RKGRGSRKSR  240
TFPTERERRV HFNDRFFDLK NLIPNPTKIG RASIVGEAID YIKELLRTIE EFKMLVEKKR  300
CGRFRSKKRA RVGEGGGEDQ EEEEDTVNYK PQSEVDQSGF NKNNNTSLRC SWLKRKSKVT  360
EIDVRIIDDE VTIKLVQKKK INCLLFTTKV LDQLQLDLHH VAGGQIGEHY SFLFNTKICE  420
GSCVYASGIA DTVMEVVEKQ YMEAVPTNGY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap482049
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516950.0AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885824.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLD7LD060.0D7LD06_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1109__AT2G31220.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]