PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

481629

Common Name

ARALYDRAFT_481629

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 334aa MW: 37808.4 Da PI: 5.7947

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
481629	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.5	2.3e-48	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 + pGfrF+Ptd el+++yL++k++g++ ++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++ratk gyWkatgk+++v+s +++ vg+ 481629 14 MFPGFRFSPTDVELISYYLRRKIDGDEDSV-AVIAEVEIYKFEPWDLPeESKLKSENEWFYFCARGRKYPHGSQSRRATKLGYWKATGKERTVKS-GNQFVGT 114 579**********************999.89***********433334678*********************************9.999 PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 k+tLvf+ grap+ge+t+W+mhey + 481629 115 KRTLVFHIGRAPRGERTEWIMHEYCI 140 **********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-54	6	155	IPR003441	NAC domain
PROSITE profile	PS51005	51.861	14	156	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSKEAEMSIA VSAMFPGFRF SPTDVELISY YLRRKIDGDE DSVAVIAEVE IYKFEPWDLP 60 EESKLKSENE WFYFCARGRK YPHGSQSRRA TKLGYWKATG KERTVKSGNQ FVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSSQKQMED GIVQDDGYVG 180 QTGGSEKEEK SYSVYDQLPN GDIAESSNVV EYQADTDDDC YAEILNDDII KLDEEALKAS 240 QAFRPTNPTH QETISSESSS SKRSKCGIKK ESTETMNSYA LFRIKNVAGT DSSWRFPNPF 300 NIKKDYSQRL MKNVLATTVF LAILFSLLDC INS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	13	166	19	174	NAC domain-containing protein 19
3swm_B	2e-42	13	166	19	174	NAC domain-containing protein 19
3swm_C	2e-42	13	166	19	174	NAC domain-containing protein 19
3swm_D	2e-42	13	166	19	174	NAC domain-containing protein 19
3swp_A	2e-42	13	166	19	174	NAC domain-containing protein 19
3swp_B	2e-42	13	166	19	174	NAC domain-containing protein 19
3swp_C	2e-42	13	166	19	174	NAC domain-containing protein 19
3swp_D	2e-42	13	166	19	174	NAC domain-containing protein 19
3ulx_A	2e-42	4	138	10	138	Stress-induced transcription factor NAC1
4dul_A	2e-42	13	166	16	171	NAC domain-containing protein 19
4dul_B	2e-42	13	166	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	481629

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT028934	0.0	BT028934.1 Arabidopsis thaliana At2g27300 mRNA, complete cds.
GenBank	DQ056544	0.0	DQ056544.1 Arabidopsis thaliana no apical meristem family protein (At2g27300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880904.2	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 40
Swissprot	Q9XIN7	0.0	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	D7LGW0	0.0	D7LGW0_ARALL; ANAC040
STRING	fgenesh2_kg.4__689__AT2G27300.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	0.0	NTM1-like 8

Link Out ? help Back to Top
Phytozome	481629
Entrez Gene	9316971

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]