PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481444
Common NameARALYDRAFT_481444
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 314aa    MW: 35313.4 Da    PI: 7.1991
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481444genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.2e-09135155526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C+ f++ G C++Gd+C FaHg
   481444 135 ACPEFRK-GSCRRGDSCEFAHG 155
              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.6E-5130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5135157IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-7135155IPR000571Zinc finger, CCCH-type
SMARTSM0035627165188IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296165189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMIGENNNRP HPTIHIPQWD QINDPTVTIS SPFSSVNING VNDYPHSPSP YFESFASLFR  60
YLPSNELTND SDSSSGDESS SLTDSFSSDE FRMYEFKIRR CARGRSHDWT ECPFAHPGEK  120
ARRRDPRKFH YAGTACPEFR KGSCRRGDSC EFAHGVFECW LHPSRYRTQP CKDGTSCRRR  180
ICFFAHTTEQ LRVLPCSLDP DLGFFSSTSP TSILVSPSFS PPSESPPLSP STGELIASMR  240
KMQLNGGGSW SSSPVRSGVR LPFSSSLRPI QAQTWPRIRE FEIEEAPAME FVESGKELRA  300
EMYARLSREN SLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap481444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053950.0AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAF3705900.0AF370590.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g25900; F17H15.7) mRNA, complete cds.
GenBankAF3754030.0AF375403.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankAK1172720.0AK117272.1 Arabidopsis thaliana At2g25900 mRNA for putative Cys3His zinc finger protein ATCTH (ATCTH), complete cds, clone: RAFL16-82-I02.
GenBankAY1294680.0AY129468.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883968.10.0zinc finger CCCH domain-containing protein 23
SwissprotO823070.0C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLD7LC090.0D7LC09_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__504__AT2G25900.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.20.0C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]