PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481137
Common NameARALYDRAFT_481137
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 286aa    MW: 32664.5 Da    PI: 5.7333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481137genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10109155455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              h  +Er+RR+++ ++f  L  llP +     kK +K++iL  A+  +k+Lq
  481137 109 EHVLAERNRREKLSQKFIALSALLPGL-----KKADKVTILDDAISRMKQLQ 155
             5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.246105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15109170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8109155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15110170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-10110159No hitNo description
SMARTSM003532.9E-13111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDEDFFLTDF SLEDIDFDFN IYEEKNLSPD ESADQSSKFD HQMHLEFLRE QPKPVVKINN  60
KQQLISFDFS SNVSSSPATE EIIMDKLVGR GTKRKTCFHG TRSPVLAKEH VLAERNRREK  120
LSQKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRK LKEEKEATRE IQSRILVKKS  180
KLLFDAEPNL SSSTLDHDQF DQALPEIDAK ISQNDILIRI HCEKSKGCMI NILKTVENLQ  240
LRIENSIVLP FGDSTLDITV LAQMDKDFSV SVLKDLVRDL RLAMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMap481137
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465500.0DQ446550.1 Arabidopsis thaliana clone pENTR221-At2g22760 basic helix-loop-helix family protein (At2g22760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882825.10.0transcription factor bHLH19
SwissprotQ1PF161e-175BH019_ARATH; Transcription factor bHLH19
TrEMBLD7LE340.0D7LE34_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__197__AT2G22760.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-157bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]