PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 480978 | ||||||||
Common Name | ARALYDRAFT_480978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 519aa MW: 56426.8 Da PI: 9.6624 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.6 | 2e-11 | 371 | 429 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK +++eLe kv++L++e ++L +l +l+ + l++++ 480978 371 KRVKRILANRVSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQN 429 899*********************************************99888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.8E-19 | 367 | 431 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 369 | 432 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-11 | 371 | 427 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-12 | 371 | 425 | No hit | No description |
Pfam | PF00170 | 1.2E-9 | 371 | 428 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.79E-21 | 372 | 421 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090567 | Biological Process | reproductive shoot system development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MVGGGDTTDT NMMQRVHSSS GTSSSSIPKQ NLHLNPALIR SHHHFRQPFT GAPPPIPPIS 60 PYSQIPATLQ PRHSRSMSQP SSFFSFDSLP PLNPPVSVSV EEKTGAGFSP SLPPSPFTMC 120 HSSSSRNAGD GENLPPRKSH RRSNSDVTFG FSSMMGQNQK SPPLTPLSSL ERSISGRDIS 180 DWSNLVKDEP IERFFKGRKK PQSEAAMDDV FTAYMNLENI DVLNSFGGED GKNGNENVEE 240 MESSRGSGTK KTNGASSSDS EGESSASGNV KVAVSSSSSG VKRRAGGDIA PTSRHYRSVS 300 MDSCFMGKLD FGDESSLKLP PSSAKVSPTN SGEGNSSAFS VEFGNGDFTA AEMKKIAADE 360 KLAEIVMADP KRVKRILANR VSAARSKERK TRYMAELEHK VQTLQTEATT LSAQLTHLQR 420 DSMGLTNQNS ELKFRLQAME QQAQLRDALS EKLTEEVQRL KLVIGEPNRR QSGSSSSEPK 480 TSLNPEMFQQ LSISQLQHQQ MQHSNQNSTM KAKHMSNK* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00037 | PBM | Transfer from AT2G21230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 480978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF401298 | 0.0 | AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds. | |||
GenBank | AY054497 | 0.0 | AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds. | |||
GenBank | AY093268 | 0.0 | AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884100.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_020884101.1 | 0.0 | probable transcription factor PosF21 | ||||
TrEMBL | D7LL15 | 0.0 | D7LL15_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__38__AT2G21230.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15625 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 480978 |
Entrez Gene | 9314608 |