PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 480792 | ||||||||
Common Name | ARALYDRAFT_480792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33393.3 Da PI: 10.6102 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.9 | 2.2e-19 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ffkv + + +++++ lp +f+++++ + e s++++++ ++g sWev + +k+++ ++ ++GW++Fv++n L +f++F+++g++ f +v +f++ 480792 19 FFKVVHSINISSENMRALPHDFVRSFSDQ-ELSRKIKIRAQWGSSWEVGI--SKNPRFyFMEKSGWEKFVRDNALGNSEFITFTHKGKMHF--TVNIFKQ 113 8899988899999999*******999766.6999****************..******555569********************9999999..9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.69E-19 | 14 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.64E-18 | 18 | 112 | No hit | No description |
SMART | SM01019 | 4.2E-19 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.099 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-17 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-14 | 197 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.136 | 200 | 291 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-11 | 202 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.3E-16 | 203 | 291 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.08E-9 | 214 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MARNADYLRC KQERKNESFF KVVHSINISS ENMRALPHDF VRSFSDQELS RKIKIRAQWG 60 SSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSEFITFTH KGKMHFTVNI FKQDGKEMMQ 120 PPKSRAFLAS SSRIKTEQEE DDMKEEVVVS SNRGPTTAAE SKGRKLNLGK KAAKESQNSK 180 RTEKVVKARR DYTGASSSTA AEFTILFKQG YLIFLRIPNS VAKDLMPDEK TIFKIHHPNG 240 KKSWNVVFLV RFGAFSGGWR RLVKEYPLAV GDTCKFSFIK PDELLLVVSK P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 480792 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY924741 | 0.0 | AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885930.1 | 0.0 | B3 domain-containing protein At2g16210 | ||||
Swissprot | Q5BPT7 | 0.0 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L143 | 0.0 | D7L143_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh2_kg.3__3493__AT2G16210.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 480792 |
Entrez Gene | 9322276 |
Publications ? help Back to Top | |||
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