PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 480741 | ||||||||
Common Name | ARALYDRAFT_480741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8979.98 Da PI: 9.4871 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.8e-12 | 10 | 54 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ Ed+++ a +++ ++ +W +Iar +g g++ +++k ++ 480741 10 SWTAKEDKQFEMALAKYDKEtpdRWQKIARAVG-GKSTEEVKRHYE 54 7******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 5 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.832 | 6 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 4.6E-11 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-14 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-10 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-8 | 11 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 78 aa Download sequence Send to blast |
MASSSISNSS WTAKEDKQFE MALAKYDKET PDRWQKIARA VGGKSTEEVK RHYELLIRDV 60 NDIESGRYPQ PRYRNTN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-27 | 1 | 76 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 480741 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006439 | 2e-99 | AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence. | |||
GenBank | CP002685 | 2e-99 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ487660 | 2e-99 | DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884127.1 | 8e-52 | protein RADIALIS-like 4 | ||||
Swissprot | Q1G3C4 | 4e-41 | RADL4_ARATH; Protein RADIALIS-like 4 | ||||
TrEMBL | D7LBA9 | 2e-50 | D7LBA9_ARALL; DNA binding protein | ||||
STRING | fgenesh2_kg.3__3442__AT2G18328.1 | 3e-51 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18328.1 | 7e-43 | RAD-like 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 480741 |
Entrez Gene | 9320193 |