PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C3H

Protein Properties

Length: 358aa MW: 39326.8 Da PI: 6.7699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
480488	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	123	143	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C F+Hg 480488 123 ACPEFRK-GGCKRGDACEFSHG 143 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.4E-5	118	144	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.521	119	145	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-6	123	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	150	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.53	153	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.568	153	177	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MMIGESHRGF NPTVHIPSWP LSEDLTASDI YGSPDGGSSM MEALAALQRY LPSNEPDPDS 60 DPDLSGPDSP IDAYSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS 120 GTACPEFRKG GCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQLR 180 VLPSQSPDRV DSFDGLSPIR RAFQFTISPS SNSPPVSPRG DSDSSPSLLS RSLGSNLGND 240 VVASLRNLQL SKVKSLSSSY NNEIGGYGSG FGSPRGSVLG PGFRSLPTTP TRPGFMNIWE 300 NGLEEEPAME RVESGRELRA QLFQKLSKEN CMGRVDPDPG QGAGDTPDVG WVSDLVM*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MMIGESHRGF NPTVHIPSWP LSEDLTASDI YGSPDGGSSM MEALAALQRY LPSNEPDPDS  60
DPDLSGPDSP IDAYSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS  120
GTACPEFRKG GCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQLR  180
VLPSQSPDRV DSFDGLSPIR RAFQFTISPS SNSPPVSPRG DSDSSPSLLS RSLGSNLGND  240
VVASLRNLQL SKVKSLSSSY NNEIGGYGSG FGSPRGSVLG PGFRSLPTTP TRPGFMNIWE  300
NGLEEEPAME RVESGRELRA QLFQKLSKEN CMGRVDPDPG QGAGDTPDVG WVSDLVM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	480488

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005169	0.0	AC005169.3 Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence.
GenBank	AY084253	0.0	AY084253.1 Arabidopsis thaliana clone 101255 mRNA, complete sequence.
GenBank	AY136395	0.0	AY136395.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds.
GenBank	BT002114	0.0	BT002114.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020888119.1	0.0	zinc finger CCCH domain-containing protein 20
Swissprot	O82199	0.0	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	D7L6G2	0.0	D7L6G2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__3189__AT2G19810.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	0.0	C3H family protein

Link Out ? help Back to Top
Phytozome	480488
Entrez Gene	9320035

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]