PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480218
Common NameARALYDRAFT_480218
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRF
Protein Properties Length: 247aa    MW: 28293.7 Da    PI: 8.4767
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.7e-2479123145
     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
             daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs+++k +
  480218  79 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKPP 123
             79**************************************99875 PP
2QLQ58.42.1e-20641237
     QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
            +FT +Q+++L++Q+l++KyLa+n+PvPp+Ll+ i++
  480218  6 PFTESQWEELENQALVFKYLASNVPVPPHLLFLIKR 41
            8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.3E-14541IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.065641IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.0E-15639IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.00579123IPR014977WRC domain
PfamPF088792.4E-1980121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MATRIPFTES QWEELENQAL VFKYLASNVP VPPHLLFLIK RPFLFSSSSS SSSSSFFSPT  60
LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR  120
KPPPTQFTPN LFLDSSLSRR RRSGYMDDFF SIEPSGSIKS CSGSAMEDND DGSCRGINKF  180
SNEEKQPDRH CFILGTDLGT CERPLMLEEK LKQRDDDEQE QGSKRFYRFL DEWPSSKSSV  240
STSLFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap480218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605860.0AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
GenBankAY1255720.0AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887234.11e-154growth-regulating factor 6 isoform X2
SwissprotQ9ZQ121e-145GRF6_ARATH; Growth-regulating factor 6
TrEMBLD7LA610.0D7LA61_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2919__AT2G06200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-145growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]