PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

480003

Common Name

ARALYDRAFT_480003

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 307aa MW: 34761.9 Da PI: 9.8443

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
480003	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.6	1.7e-23	66	146	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Lie ++e++ +++rg lk ++Wee++ ++ ++ g+ers++qC++k+e+++kr++ ++++++ s +p+++q+e 480003 66 WTHDETLLLIESYKEKWYAIGRGPLKSTHWEEIAVAVsSRSGVERSSTQCRHKIEKMRKRFRSERQNMGPI-----SIWPFYNQME 146 *********************************998899************************84.....68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.493	66	123	IPR017877	Myb-like domain
Pfam	PF13837	3.7E-20	66	148	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MTTPSPTSSP PSDSNPNSAA TPPHHKQQPP SPPPLTNPSS PPPQITVVAL AASTSAVARK 60 TQPVLWTHDE TLLLIESYKE KWYAIGRGPL KSTHWEEIAV AVSSRSGVER SSTQCRHKIE 120 KMRKRFRSER QNMGPISIWP FYNQMEELDS NPAPISARPL TRLPPNSNNH YKDDDDEDDD 180 NYEEEEDEDE RQSKSRSINY ILRRPGTVNR FAGVGGGLLS WGQKERSSKR KRNDGDGGER 240 RRKGARAVAA EIRAFAERVM VMEKKKIEFV KETVRLRKEM EIRRINLIQS SQTQLLEFIN 300 NAFDSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	242	KRKRNDGDGGERRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	480003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028609	0.0	AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
GenBank	AK118157	0.0	AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19.
GenBank	BT005491	0.0	BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002883567.1	0.0	trihelix transcription factor ASIL1
TrEMBL	D7L5T7	0.0	D7L5T7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__2704__AT3G24860.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-146	Trihelix family protein

Link Out ? help Back to Top
Phytozome	480003
Entrez Gene	9319634