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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 479789 | ||||||||
Common Name | ARALYDRAFT_479789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CPP | ||||||||
Protein Properties | Length: 685aa MW: 75414.7 Da PI: 6.184 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 3.9e-16 | 388 | 426 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 479789 388 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 426 689**********************************96 PP | |||||||
2 | TCR | 51.4 | 2.2e-16 | 473 | 511 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 479789 473 RHKRGCNCKKSNCLKKYCECYQGGVGCSVNCRCEGCKNV 511 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.3E-19 | 387 | 428 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.614 | 388 | 513 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.6E-12 | 390 | 425 | IPR005172 | CRC domain |
SMART | SM01114 | 1.9E-17 | 473 | 514 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 8.3E-12 | 475 | 510 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MDKPQKNHTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF 60 TSPHVNSHRE SRFFRCHNSV DRAKHLESLD GSAIKEEVVV PVIEDLNKEA SLEDEEETSV 120 ETSYELPQIL KFGSQTPEDS DSPCTEDVVI EASSDPPRGD SGSSSEDVKM GLQKMLDVRE 180 EKDTPDCGRL ISDATELLVF RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPKITEDIP 240 ANGSSNENEP LAVLPNESVF NLHRGGMRRR CLDFEMPGKR KKDIVDDQQS VCDNNVTGES 300 SSRCVVPGIG LHLNAVAMSA KDSNINLIHD YSISGEIQKS FSGSITPIHS QDTVQETSDQ 360 AENEPVEEIP KALAFPERKS EQAGEGESCK RCNCKKSKCL KLYCECFAAG VYCIEPCSCI 420 DCFNKPIHEE TVLATRKQIE SRNPLAFAPK VIRSADSIME AGDDASKTPA SARHKRGCNC 480 KKSNCLKKYC ECYQGGVGCS VNCRCEGCKN VFGRKEGSLL VIMESKLEED QEAYEKRLAK 540 IQHNIEVSKE VEQNPSSDQP STPLPPYRHL VVHQPFLSKN RLPPTQFFLG TGSSSFRKPD 600 SGLTQSQNEK KPLETVAEDK TEIMPEILLN SPIANIKAIS PNSKRVSPPQ PGSSESGSIL 660 RRRGNGRKLI LRSIPAFPSL NPNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 392 | 511 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 392 | 511 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 281 | RRRCLDFEMPGKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00370 | DAP | Transfer from AT3G22780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 479789 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF204059 | 0.0 | AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds. | |||
GenBank | AF206324 | 0.0 | AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886693.1 | 0.0 | CRC domain-containing protein TSO1 | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | D7L2F3 | 0.0 | D7L2F3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__2490__AT3G22780.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 479789 |
Entrez Gene | 9319444 |
Publications ? help Back to Top | |||
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