PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479789
Common NameARALYDRAFT_479789
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CPP
Protein Properties Length: 685aa    MW: 75414.7 Da    PI: 6.184
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479789genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.9e-16388426240
     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
             ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  479789 388 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 426
             689**********************************96 PP
2TCR51.42.2e-16473511139
     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
             ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  479789 473 RHKRGCNCKKSNCLKKYCECYQGGVGCSVNCRCEGCKNV 511
             589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-19387428IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.614388513IPR005172CRC domain
PfamPF036386.6E-12390425IPR005172CRC domain
SMARTSM011141.9E-17473514IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.3E-12475510IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDKPQKNHTS QIGTSTPKSK FEDSPVFNYI SNLSPIESVK SISTAQTFSS LSFTSPPPVF  60
TSPHVNSHRE SRFFRCHNSV DRAKHLESLD GSAIKEEVVV PVIEDLNKEA SLEDEEETSV  120
ETSYELPQIL KFGSQTPEDS DSPCTEDVVI EASSDPPRGD SGSSSEDVKM GLQKMLDVRE  180
EKDTPDCGRL ISDATELLVF RSPNDSEAFR CLVDKISSSE RRFCAGVKST KRPKITEDIP  240
ANGSSNENEP LAVLPNESVF NLHRGGMRRR CLDFEMPGKR KKDIVDDQQS VCDNNVTGES  300
SSRCVVPGIG LHLNAVAMSA KDSNINLIHD YSISGEIQKS FSGSITPIHS QDTVQETSDQ  360
AENEPVEEIP KALAFPERKS EQAGEGESCK RCNCKKSKCL KLYCECFAAG VYCIEPCSCI  420
DCFNKPIHEE TVLATRKQIE SRNPLAFAPK VIRSADSIME AGDDASKTPA SARHKRGCNC  480
KKSNCLKKYC ECYQGGVGCS VNCRCEGCKN VFGRKEGSLL VIMESKLEED QEAYEKRLAK  540
IQHNIEVSKE VEQNPSSDQP STPLPPYRHL VVHQPFLSKN RLPPTQFFLG TGSSSFRKPD  600
SGLTQSQNEK KPLETVAEDK TEIMPEILLN SPIANIKAIS PNSKRVSPPQ PGSSESGSIL  660
RRRGNGRKLI LRSIPAFPSL NPNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1639251114121Protein lin-54 homolog
5fd3_B1e-1639251114121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267281RRRCLDFEMPGKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap479789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2040590.0AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds.
GenBankAF2063240.0AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886693.10.0CRC domain-containing protein TSO1
SwissprotQ9LUI30.0TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLD7L2F30.0D7L2F3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2490__AT3G22780.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]