 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
479452 |
| Common Name | ARALYDRAFT_479452 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
C3H |
| Protein Properties |
Length: 390aa MW: 43432.5 Da PI: 7.3752 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 479452 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28 | 3.9e-09 | 107 | 131 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C f++ GtC+ G+ C+FaHg
479452 107 YKTRMCAKFRA-GTCRNGELCNFAHG 131
9**********.*************8 PP
|
| 2 | zf-CCCH | 19.5 | 1.7e-06 | 197 | 211 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F+H
479452 197 F-GeECPYGDRCNFIH 211
5.449*********** PP
|
| 3 | zf-CCCH | 43 | 7.7e-14 | 273 | 299 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f tG+C++Gd+C+FaHg+
479452 273 WKTRLCMKFDITGQCPFGDKCHFAHGQ 299
8************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 7.9E-15 | 104 | 139 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.85E-8 | 105 | 137 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-4 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.793 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-5 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-6 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.455 | 186 | 214 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-8 | 188 | 212 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.13E-9 | 268 | 303 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.1E-15 | 270 | 302 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.253 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.5E-7 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-11 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPTNNEQGDL HSLSESQSQS QSQPPQQLQP 60
ALKRPRLVDD NVFNPASSFP QPSSSNPWMV PSLNPPPVNK GTANIFYKTR MCAKFRAGTC 120
RNGELCNFAH GIEDLRQPPS NWQEIVGPPP GQDREKERER ERERERERPS LAPVANNNWE 180
DDQKIILRMK LCRKFCFGEE CPYGDRCNFI HEDLSKFRED SGKLRESSVI SVGTSAADPP 240
SDTASNHIEV NRQGSIPVPA PMNNGGVVKT VYWKTRLCMK FDITGQCPFG DKCHFAHGQT 300
ELHNSVGRVD GEAVNATASV SKQTVVPANE AFAMKPTTQV TADSSGLNEE GRRKKCLLKW 360
SDSKKINRIY GDWIDDLPVG QKSSKPVES*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 157 | 167 | RERERERERER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY037226 | 0.0 | AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
| GenBank | AY081745 | 0.0 | AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
