PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479433
Common NameARALYDRAFT_479433
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 276aa    MW: 31469.6 Da    PI: 9.4945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479433genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17127216198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f k +++s+v+   +l lp +f+++h+ k  ++ ++tl de+ ++  vk+  +k++    l++GW++F+ +++L +gD vvF+l+ r+ f  +v ++r
  479433 127 FTKPMLQSHVTGGFWLGLPLPFCKAHMPK--RDEMMTLVDEEDEESMVKYLAEKNG----LSGGWRGFAIDHQLVDGDAVVFQLITRTMF--KVYIIR 216
             899***********************844..6679***************666666....************************998777..777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-21118217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-24120218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-25125216No hitNo description
PROSITE profilePS5086310.969127218IPR003340B3 DNA binding domain
PfamPF023625.9E-15127216IPR003340B3 DNA binding domain
SMARTSM010195.3E-22127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS SSKPSPAKPR TMRIPVDFSE  60
VRRSSRAKGP PPSYKEFGLE PLERRPRRSS QRRDLLNRVY ASDDARMYAF DRAEKLQSSL  120
DPEFPSFTKP MLQSHVTGGF WLGLPLPFCK AHMPKRDEMM TLVDEEDEES MVKYLAEKNG  180
LSGGWRGFAI DHQLVDGDAV VFQLITRTMF KVYIIRVNED ANKDSDGNEE DEDNDNELNK  240
KQKENVSEAR QLRSSGKRKR GGNNVSNLSL PLVIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap479433
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936210.0AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBankDQ4875610.0DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887707.10.0B3 domain-containing protein At3g19184
SwissprotQ1G3M31e-160Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLD7L9850.0D7L985_ARALL; DNA binding protein
STRINGfgenesh2_kg.3__2134__AT3G19184.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-133B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]