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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
479371 |
Common Name | ARALYDRAFT_479371 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
M-type_MADS |
Protein Properties |
Length: 363aa MW: 40763.5 Da PI: 9.3101 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
479371 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 70.8 | 1.3e-22 | 26 | 73 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ ++s r ++++kR+++++KKAeELS+LCd++v+vi + s+gkl++++
479371 26 SASSSSRATSLIKRQATVFKKAEELSILCDIDVCVICYMSDGKLKTWP 73
568999*****************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MASSSSSSLS SSSSKKKKNL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCDIDVCV 60 ICYMSDGKLK TWPDDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKEEEEKK 120 KKIKVRRVSR VKYPVWDPRF DNYSVEQLTG LVQSLERNLT RIQHRTHAVG EAQGQRRMQY 180 TNMASQELMM AHTMNQLQQH SNQVSMYLWN HDNGSFSQIP VSALASNQAQ SLAPIPSELM 240 IYPNSDVGSY SGSLGVQGTG INGLQTMNML TYNNINSVND FAKQIDQNSR VESYSSLLGV 300 HEYGNNEFEN TNMSSRNNFN VQDYAGLLGV EGTVTGTNGL QSMNMHDYNN NNNSNANGLS 360 HQL
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB026654 | 0.0 | AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11. |
GenBank | BT029549 | 0.0 | BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |