PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 363aa MW: 40763.5 Da PI: 9.3101

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
479371	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.3e-22	26	73	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + ++s r ++++kR+++++KKAeELS+LCd++v+vi + s+gkl++++ 479371 26 SASSSSRATSLIKRQATVFKKAEELSILCDIDVCVICYMSDGKLKTWP 73 568999*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.4E-8	13	74	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-18	28	107	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.755	28	76	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-16	28	72	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.42E-17	36	100	No hit	No description
PRINTS	PR00404	6.3E-6	38	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-6	53	74	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MASSSSSSLS SSSSKKKKNL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCDIDVCV 60 ICYMSDGKLK TWPDDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKEEEEKK 120 KKIKVRRVSR VKYPVWDPRF DNYSVEQLTG LVQSLERNLT RIQHRTHAVG EAQGQRRMQY 180 TNMASQELMM AHTMNQLQQH SNQVSMYLWN HDNGSFSQIP VSALASNQAQ SLAPIPSELM 240 IYPNSDVGSY SGSLGVQGTG INGLQTMNML TYNNINSVND FAKQIDQNSR VESYSSLLGV 300 HEYGNNEFEN TNMSSRNNFN VQDYAGLLGV EGTVTGTNGL QSMNMHDYNN NNNSNANGLS 360 HQL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MASSSSSSLS SSSSKKKKNL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCDIDVCV  60
ICYMSDGKLK TWPDDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKEEEEKK  120
KKIKVRRVSR VKYPVWDPRF DNYSVEQLTG LVQSLERNLT RIQHRTHAVG EAQGQRRMQY  180
TNMASQELMM AHTMNQLQQH SNQVSMYLWN HDNGSFSQIP VSALASNQAQ SLAPIPSELM  240
IYPNSDVGSY SGSLGVQGTG INGLQTMNML TYNNINSVND FAKQIDQNSR VESYSSLLGV  300
HEYGNNEFEN TNMSSRNNFN VQDYAGLLGV EGTVTGTNGL QSMNMHDYNN NNNSNANGLS  360
HQL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	479371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026654	0.0	AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBank	BT029549	0.0	BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885269.2	0.0	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	0.0	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	D7L933	0.0	D7L933_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.3__2072__AT3G18650.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-171	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	479371
Entrez Gene	9321335

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]