PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479301
Common NameARALYDRAFT_479301
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 810aa    MW: 91847.1 Da    PI: 6.1364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08446490246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+ Ed+ l++ +++    +W  Ia  +g++Rt+ qc  r+q 
           479301 446 GPWTAAEDKNLLRIIEKKSLTDWVDIAVSLGTNRTPFQCLTRYQR 490
                      89*****************************************96 PP
2Myb_DNA-binding45.71.5e-14498542146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT+eEd++l  av+++G ++W ++a+ +  gRt+ qc +rw k
           479301 498 KKEWTAEEDDQLRAAVELFGDKDWQSVANVLK-GRTGPQCSNRWKK 542
                      679****************************9.***********98 PP
3Myb_DNA-binding513.2e-16549594147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g W+ eEd++ + av+++G+ +W++I++ ++ gRt  qc++rw++ 
           479301 549 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTQTQCRERWLNC 594
                      799*****************************.***********996 PP
4Myb_DNA-binding41.82.6e-13601644146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+WT+eEd +l +a++++G   W+++a+++   Rt+ qc  rw  
           479301 601 RGKWTEEEDRKLREAIAEHGYS-WSKVASKLS-CRTDSQCLRRWKR 644
                      89******************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.879346439IPR017877Myb-like domain
SMARTSM0071715350441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-7353369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-7415452IPR009057Homeodomain-like
SuperFamilySSF466893.99E-13423489IPR009057Homeodomain-like
PROSITE profilePS500908.85440492IPR017877Myb-like domain
SMARTSM007171.0E-8444494IPR001005SANT/Myb domain
PfamPF002494.1E-7446490IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-13453508IPR009057Homeodomain-like
SuperFamilySSF466895.38E-21477547IPR009057Homeodomain-like
PROSITE profilePS5129422.458493548IPR017930Myb domain
SMARTSM007171.5E-14497546IPR001005SANT/Myb domain
PfamPF002495.4E-13498542IPR001005SANT/Myb domain
CDDcd001671.50E-11500544No hitNo description
Gene3DG3DSA:1.10.10.608.4E-18509554IPR009057Homeodomain-like
SMARTSM007172.4E-13548597IPR001005SANT/Myb domain
PfamPF002499.7E-15549594IPR001005SANT/Myb domain
PROSITE profilePS5129413.381549595IPR017930Myb domain
CDDcd001674.25E-10551593No hitNo description
Gene3DG3DSA:1.10.10.608.5E-21555600IPR009057Homeodomain-like
SuperFamilySSF466891.94E-25575649IPR009057Homeodomain-like
PROSITE profilePS5129426.577596650IPR017930Myb domain
SMARTSM007173.8E-12600648IPR001005SANT/Myb domain
PfamPF002492.6E-12601645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-18601645IPR009057Homeodomain-like
CDDcd001672.68E-10603645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD KFAAKTGSIE PDGGGGGEMP  60
SDSENEDDFE MLRSIKSQLA SSKDADLSSG PPIGLSLLSD SESEDDFELI RSIKSQLALS  120
MDVSLPPIGL SDDDEDDAFE TLRAIRRRFS AYKNFDSEGN FMNDSPGKKK QVHDLDNEPS  180
SELLSRSNTC ESFPDHGKSV VTVPDSEDVH EKTSIEPPDH LETCQVSAAS SSFPKAALAF  240
VDAIRRNRAY QKFLRRKLVE IEATIEQNEK HKKNVKIVKD FQASCKRITK LALSQKKDPR  300
VELISTRKSE PCDSSEGNDK KISPLMLGPA ENPCVANYRM VLEKYPISVE RRKWSTEENK  360
KLAKGLKQEV QKILLSEAIE QSSDLEGSIY DIDTINESIG NLEITPEMIR QFLPKINWDL  420
LDIKDRSAAE CEARWMSSED PLINHGPWTA AEDKNLLRII EKKSLTDWVD IAVSLGTNRT  480
PFQCLTRYQR SLNPSILKKE WTAEEDDQLR AAVELFGDKD WQSVANVLKG RTGPQCSNRW  540
KKSLRPTRKG TWSLEEDKRV KVAVTLFGSQ NWHKISQFVP GRTQTQCRER WLNCLDPKVN  600
RGKWTEEEDR KLREAIAEHG YSWSKVASKL SCRTDSQCLR RWKRLYPHQV ALLQEARRLQ  660
KEGSVGNFVD RESERPSLVT GAILALPEIS LEPEPDSVTV KKKRKAKEKK SDAERQPKRR  720
RKALKKCSGD VCRQENETVC ENEPNNEGEE RLLELECHNE ILGNAKEKQR RKRKSVAETS  780
NNNTGLKKLT PRRKKVSAVV PKKNQDAPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-304076426159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-304076426159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1702720KRKAKEKKSDAERQPKRRR
2702721KRKAKEKKSDAERQPKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap479301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883109.10.0uncharacterized protein LOC9319175 isoform X2
TrEMBLD7L7Z60.0D7L7Z6_ARALL; MYB4R1
STRINGfgenesh2_kg.3__2002__AT3G18100.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1