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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 479152 | ||||||||
| Common Name | ARALYDRAFT_479152 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 688aa MW: 74715.3 Da PI: 6.2887 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 84 | 1.6e-26 | 235 | 287 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G+e A+Pk+ilelm+v+gLt+e+v+SHLQkYR+
479152 235 KPRVVWSVELHQQFVAAVNQL-GAE-AVPKKILELMNVPGLTRENVASHLQKYRI 287
79*******************.655.****************************7 PP
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| 2 | Response_reg | 76 | 1.4e-25 | 37 | 145 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Ga
479152 37 VLVVDDDPTCLMILERMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 131
89*********************.***************888889**********************6644.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
479152 132 DYLIKPVRMEALKN 145
*********99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 2.4E-211 | 15 | 679 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 4.55E-36 | 33 | 171 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.5E-41 | 34 | 172 | No hit | No description |
| SMART | SM00448 | 7.4E-31 | 35 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.221 | 36 | 151 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 8.2E-23 | 37 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 6.37E-28 | 38 | 150 | No hit | No description |
| PROSITE profile | PS51294 | 10.463 | 232 | 290 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 4.66E-17 | 233 | 291 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 234 | 292 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.6E-23 | 235 | 287 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.6E-8 | 237 | 286 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 688 aa Download sequence Send to blast |
MNPSHGRGLG SAGGSSSGRS QGGGETVVEM FPSGLRVLVV DDDPTCLMIL ERMLRTCLYE 60 VTKCNRAEMA LSLLRKNKHG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKS 120 VVLKGVTHGA VDYLIKPVRM EALKNIWQHV VRKRRSEWSV PEHSGSIEET GERQQQQHRG 180 GGGGAAVSGG EDAVDDNSSS VNEGNNWRSS SRKRKDEEGE EQGDDKDEDA SNLKKPRVVW 240 SVELHQQFVA AVNQLGAEAV PKKILELMNV PGLTRENVAS HLQKYRIYLR RLGGVSQHQG 300 NLNNSFMTGQ DASFGPLSTL NGFDLQALAV TGQLPAQSLA QLQVAGLGRP AMVSKSGLPV 360 SSIVDERSIF SFDNTKTRFG EGLGHHGQQP QQQPQMNLLH GVPTGLQQQL PMGNRMSIQQ 420 QIAAVRAGHS VQNNGMLMPI AGQQSLPRGP PPMLTSSQSS IRQPMLSNRI SERSSFSGRN 480 NIPESSRVLP TGYTNLTTQH SSSAMAYNNY QPELPVNSFP LASAPGLSVP VRKATSYQEE 540 VNSSEAGFTT PSYDMFTTRQ NDWDLRNIGV AFDSHQDAES AAFSASEAYS SSSMSRNNTT 600 VAATEHGRNH QQQPPGMVPH HQGYADGNSG SVRVKSERVA ADTAAMAFHE QYSNQEDLMS 660 ALLKQEGIAP VDGEFDFDAY SIDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-20 | 234 | 292 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 479152 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK176489 | 0.0 | AK176489.1 Arabidopsis thaliana mRNA for putative ARR1 protein, complete cds, clone: RAFL24-30-K07. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006297106.1 | 0.0 | two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | D7L683 | 0.0 | D7L683_ARALL; Two-component response regulator | ||||
| STRING | fgenesh2_kg.3__1853__AT3G16857.2 | 0.0 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 479152 |
| Entrez Gene | 9319097 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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