PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

478996

Common Name

ARALYDRAFT_478996

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 318aa MW: 35487.7 Da PI: 8.9247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
478996	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.5e-51	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lppGfrF Ptdeel+veyL++k++g++++l + i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g+ vg+k 478996 14 LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-QLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST-EGRRVGIK 114 79*************************9.89***********8777899******************************99999.9999 PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfy g+apkg+kt+W+mheyrl 478996 115 KALVFYIGKAPKGTKTNWIMHEYRL 139 *********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-66	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.765	14	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDPWVLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKQA YNNLMTSGRE 180 YSNNGSSTSS SSHQYDDVLE SLHEIDNRSL GFAAGSSNSL PRCHRPVLTN QKTGFHGLAR 240 EPSFDWANLV GQNSVPELGL SQNVPSLRYG DGGTQQQAEG IPRFNYNSDV LAHQGFSVDP 300 VNGFGYSGQQ SSGFGFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-119	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-119	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-119	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-119	1	168	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-119	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-119	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00360	DAP	Transfer from AT3G15500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	478996

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269\|PubMed:15319476}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB049070	0.0	AB049070.1 Arabidopsis thaliana AtNAC3 mRNA, complete cds.
GenBank	BT025659	0.0	BT025659.1 Arabidopsis thaliana At3g15500 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882947.1	0.0	NAC domain-containing protein 55
Swissprot	Q9LDY8	0.0	NAC55_ARATH; NAC domain-containing protein 55
TrEMBL	D7L4U3	0.0	D7L4U3_ARALL; ATNAC3
STRING	fgenesh2_kg.3__1697__AT3G15500.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	0.0	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	478996
Entrez Gene	9319013

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zheng XY, et al. Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Gimenez-Ibanez S, et al. JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] Fu Y,Ma H,Chen S,Gu T,Gong J Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]