PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478832
Common NameARALYDRAFT_478832
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 446aa    MW: 48425.3 Da    PI: 10.2578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478832genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41e-1483170186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk++k +   +  + +s++++fd+l+
    478832  83 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 170
               7*************************************8766667789999******************999987..66678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2581172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYPL TPPATSSQKD PDALALALLP  60
IHASGGGNSS SGRPTGGGGR EDCWSEGATA VLIDAWGERY LELSRGNLKQ KHWKEVAEIV  120
SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIATGGGR SRWVFFDKLD RLIGSTAKIP  180
TATPGISSGG GPVGGLHKIP MGIPMGNRSN LYHQQAKAAT PPFNNIDRLI GATARVSAAS  240
FGGSGGGGGG GSVNVPMGIP MSSRSTPFGQ QGRTLPQQGR TLPQQQQQGM MVKKCSESKR  300
WRFRKRNASD SDSESEAAMS DDSGDSLPPP PLSKRLKTEE KKKQDGDGVG NKWRELTRAI  360
MRFGEAYEQT ENAKLQQVVE MEKERMKFLK ELEMQRMQFF VKTQLEISQL KQQHGRRMGN  420
TSNDHHSRKN NINVIVNNNN DLGNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap478832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006000.0AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBankAY0721870.0AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankAY1138530.0AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885017.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLD7L2D20.0D7L2D2_ARALL; Transcription factor
STRINGfgenesh2_kg.3__1533__AT3G14180.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors