PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 446aa MW: 49511.2 Da PI: 6.113

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
478672	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.2e-31	236	290	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLH++Fv+ v +L G+ekAtPk++++lm+v+gLt++hvkSHLQkYRl 478672 236 KTRMRWTPELHDSFVKSVIKLEGPEKATPKAVMKLMNVEGLTIYHVKSHLQKYRL 290 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-29	234	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-15	235	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-22	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	238	289	IPR001005	SANT/Myb domain
Pfam	PF14379	3.5E-22	326	373	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MNRYSLVSTA TDECNKGVVQ TCSTSPSPVH NFLNVQPEHR KSPFIRSQSP DSTGQLWPKN 60 ISQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSIFS 120 EDLGNQCDGD NSGSLLKDFL NLSGDACSDG GFHDFGCSND SFCLSDQMEL QFLSDELELA 180 ITDRAETPRL DEIYETPLAL SNPVTRLSPS QSCVAGAMSI DVVSSHPSPG SAANHKTRMR 240 WTPELHDSFV KSVIKLEGPE KATPKAVMKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE 300 KKNENSEEKK LALSNSEADE KKKGAIQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA 360 KYLEKMLEEQ RKTGRLICSS SSQTVLSPSD DSIPDSQNMS KTEASSPQRS TSAKKKASET 420 EEDKCESPQK RRRLENKAES EDAER*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MNRYSLVSTA TDECNKGVVQ TCSTSPSPVH NFLNVQPEHR KSPFIRSQSP DSTGQLWPKN  60
ISQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSIFS  120
EDLGNQCDGD NSGSLLKDFL NLSGDACSDG GFHDFGCSND SFCLSDQMEL QFLSDELELA  180
ITDRAETPRL DEIYETPLAL SNPVTRLSPS QSCVAGAMSI DVVSSHPSPG SAANHKTRMR  240
WTPELHDSFV KSVIKLEGPE KATPKAVMKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE  300
KKNENSEEKK LALSNSEADE KKKGAIQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA  360
KYLEKMLEEQ RKTGRLICSS SSQTVLSPSD DSIPDSQNMS KTEASSPQRS TSAKKKASET  420
EEDKCESPQK RRRLENKAES EDAER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	413	432	KKKASETEEDKCESPQKRRR
2	429	433	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	478672

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050889	0.0	AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	AY096674	0.0	AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886314.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	D7L0M9	0.0	D7L0M9_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__1373__AT3G13040.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	478672
Entrez Gene	9321004

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]