PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478587
Common NameARALYDRAFT_478587
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 349aa    MW: 38953.2 Da    PI: 9.9353
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478587genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.1e-1063104445
             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  478587  63 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 104
             5888*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-854107No hitNo description
SMARTSM003381.9E-760123IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.43862106IPR004827Basic-leucine zipper domain
PfamPF001706.8E-764104IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-764107No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
PfamPF141442.1E-34146221IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MADTSSRTDL VIILLFYFLY NVTPGRLVPG SLGKTWDILP SDRGQMLAAA SDSSDRSKDK  60
MDQKTLRRLA QNREAARKSR LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GVFISSSGDQ  120
AHSTGGNGAL AFDAEHSRWL EEKNRQMNEL RSALNAHAGD TELRIIVDGV MAHYEELFRI  180
KSNAAKNDVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL ANQLEPMTER QVMGINSLQQ  240
TSQQAEDALS QGMESLQQSL ADTLSSGTLG SSSSDNVASY MGQMAMAMGQ LGTVEGFIRQ  300
ADNLRLQTLQ QMLRVLTTRQ SARALLAIHD YSSRLRALSS LWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap478587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001030678.10.0TGACG motif-binding factor 6
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLD7KZR00.0D7KZR0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1288__AT3G12250.40.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.40.0TGACG motif-binding factor 6