PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 265aa MW: 29497 Da PI: 7.2958

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
478469	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.2e-07	33	78	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE + + +a + + + +W ++a++++ g+t ++ + k 478469 33 SWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVLDVMKQYSK 78 7***************99*********.**999988876 PP
2	Myb_DNA-binding	39.9	9.9e-13	129	173	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky 478469 129 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 173 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.361	29	82	IPR017884	SANT domain
SMART	SM00717	1.3E-8	30	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	30	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-11	32	87	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-6	33	78	IPR001005	SANT/Myb domain
CDD	cd00167	8.00E-8	34	79	No hit	No description
PROSITE profile	PS51294	18.577	122	178	IPR017930	Myb domain
SuperFamily	SSF46689	2.3E-15	124	177	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-17	125	177	IPR006447	Myb domain, plants
SMART	SM00717	1.7E-10	126	176	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-11	126	178	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-10	129	173	IPR001005	SANT/Myb domain
CDD	cd00167	4.26E-9	129	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
METLHPFSHL PISDHRFVVQ EMVSLHSSSS SSSWTKEENK MFERALAIYA EDSPDRWFKV 60 ASMIPGKTVL DVMKQYSKLE EDVFDIEAGR VPIPGYPAAS SPLAFDPDTC RKRPNGARGS 120 DQDRKKGVPW TEEEHRRFLL GLLKYGKGDW RNISRNFVVS KTPTQVASHA QKYYQRQLSG 180 AKDKRRPSIH DITTGNLLNA NLNRSFSDHT GILPDLGFID KDNAEDGVIF MGQNVSSENL 240 FSPSPTSFEA AINFAGQNAF SAGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-16	27	111	4	88	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00347	DAP	Transfer from AT3G11280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	478469

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056180	0.0	AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBank	AY091265	0.0	AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBank	AY550308	0.0	AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884839.1	0.0	transcription factor DIVARICATA
Refseq	XP_020888299.1	0.0	transcription factor DIVARICATA
Swissprot	Q8S9H7	4e-72	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D7L9W1	0.0	D7L9W1_ARALL; Myb family transcription factor
STRING	fgenesh2_kg.3__1170__AT3G11280.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4340	26	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	478469
Entrez Gene	9318789

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]