PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 478447 | ||||||||
Common Name | ARALYDRAFT_478447, DREB2B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 325aa MW: 36449.9 Da PI: 5.3231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 76 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f taeeAa+a+++a+ ++g 478447 76 CSFRGVRQRI-WGKWVAEIREP---N-RgQRLWLGTFPTAEEAAAAYDEAASVMYG 126 579****998.**********8...3.35*********************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.17E-19 | 76 | 136 | No hit | No description |
Pfam | PF00847 | 2.6E-13 | 76 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.878 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 77 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-38 | 77 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 78 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 78 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-9 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAVYEKTGTD TPKKRKSRAR ADGSTVADRL KKWKEYNEIL EVSAIKEGEK PKRKVPAKGS 60 KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPNRGQ RLWLGTFPTA EEAAAAYDEA 120 ASVMYGPLAR LNFPQSVGSE LTSTSSQSEV CTVENKAVLC GDVCVKHEDI DCESKPCSQI 180 LDVREESCVT RPDSCAVGHH DTNSVLNYDL LLEFEQQYWS ETLQEKEKPK QEEEEIQQKK 240 RRYSNINSNI SNRICLLLQI MILWDPNELF DIDELLGDMN GGMLPGPDQS QDPNHVNSGS 300 YDLHPLHLEP HDGHEFDGLS TLDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 78 | 139 | 6 | 68 | ATERF1 |
3gcc_A | 3e-18 | 78 | 139 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00346 | DAP | Transfer from AT3G11020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 478447 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007791 | 0.0 | AB007791.1 Arabidopsis thaliana mRNA for DREB2B, complete cds. | |||
GenBank | AB016571 | 0.0 | AB016571.1 Arabidopsis thaliana DREB2B gene, complete cds. | |||
GenBank | AK117363 | 0.0 | AK117363.1 Arabidopsis thaliana At3g11020 mRNA for putative DREB2B transcription factor, complete cds, clone: RAFL16-93-F04. | |||
GenBank | ATAC009991 | 0.0 | AC009991.5 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence. | |||
GenBank | BT008351 | 0.0 | BT008351.1 Arabidopsis thaliana At3g11020 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | KC412253 | 0.0 | KC412253.1 Arabidopsis thaliana DRE/CRT-binding protein 2B (DREB2B) mRNA, DREB2B-AT3G11020 allele, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888280.1 | 0.0 | dehydration-responsive element-binding protein 2B | ||||
Swissprot | O82133 | 1e-162 | DRE2B_ARATH; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | D7L9T7 | 0.0 | D7L9T7_ARALL; DRE-binding protein 2B | ||||
STRING | fgenesh2_kg.3__1148__AT3G11020.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2874 | 17 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 1e-154 | DRE/CRT-binding protein 2B |
Link Out ? help Back to Top | |
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Phytozome | 478447 |
Entrez Gene | 9318775 |