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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 478384 | ||||||||
Common Name | ARALYDRAFT_478384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 561aa MW: 63232.9 Da PI: 4.2515 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8.2e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat+ gyWk+tgkd+e+l+ ++++vg 478384 9 LAPGFRFHPTDEELVRYYLKRKICNKPFKF-DAISVTDVYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYRNGSKTNRATEMGYWKTTGKDREILN-GSKVVG 109 579**************************9.99**************95347777888**************************************.9***** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLv++kgrap+ge+t+Wvmheyrl 478384 110 MKKTLVYHKGRAPRGERTNWVMHEYRL 136 *************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.928 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009819 | Biological Process | drought recovery | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVTDVYKSE PWDLPDKSKL 60 KSRDLEWYFF SMLDKKYRNG SKTNRATEMG YWKTTGKDRE ILNGSKVVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLVDED LDKTGVHQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWE 180 EEDDMTFVPN QEDLGSQDHV YVDMDDIDQK SENFVVYDAI PIPLNFIHGE SSNNVETNYS 240 DSVNYIQPGN YVDSGGYFEQ PEESYEKDQK PIIRDGNLQN DALFQEEEIG CGVQDEHTSN 300 LLSSENIFGT DTSCYNDFPV ESNYLTGEAF LDPNSNLLQN DGLYLETNDL SSTQQDGFDF 360 EDYLTFFDED DESAQNLTFD PSQLMGNEDI FVDQEELFQE VETKELKKEE TSGSKHVVEE 420 KEKDEASCSK QVDADATEFE PDYKYPFLKK ASHMLAAIPA PPAFASELPT KDAAIRLHAA 480 QSSGSVHVTA GMITISDGNM GWSYGKNGNF DLILSLGLVQ GNTASEKSGN SSAWAMLIFM 540 CLWVLVLSVS FKVSILVSSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00343 | DAP | Transfer from AT3G10500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 478384 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY051003 | 0.0 | AY051003.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. | |||
GenBank | AY079345 | 0.0 | AY079345.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886650.1 | 0.0 | NAC domain-containing protein 53 | ||||
Swissprot | Q949N0 | 0.0 | NAC53_ARATH; NAC domain-containing protein 53 | ||||
TrEMBL | D7L8Z7 | 0.0 | D7L8Z7_ARALL; ANAC053 | ||||
STRING | fgenesh2_kg.3__1085__AT3G10500.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 0.0 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | 478384 |
Entrez Gene | 9318743 |
Publications ? help Back to Top | |||
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