PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478332
Common NameARALYDRAFT_478332
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 405aa    MW: 46217.3 Da    PI: 8.1273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478332genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.91.1e-2283186186
  trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
               +Wt+ +v++Li a+ +++++ + +                  +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++  +++
    478332  83 KWTDTMVRLLIMAVFYIGDEAGLNDpidpkkktgggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVVENQGLLE 183
               7**************999888865556666778889999999**********************************************89*******9999 PP

  trihelix  84 qle 86 
               +++
    478332 184 SMD 186
               998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2081212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPQNPQNPVQ FQHPHPYTTS GDQQTQPPMK SLYPYASKPK QLSPISGAGD DEDRGSGSGS  60
GCNPEDSAGT DGKRKLSQWH RMKWTDTMVR LLIMAVFYIG DEAGLNDPID PKKKTGGGGG  120
GGMLQKKGKW KSVSRAMVEK GFSVSPQQCE DKFNDLNKRY KRVNDILGKG IACRVVENQG  180
LLESMDHLTV KLKDEVKKLL NSKHLFFREM CAYHNSCGHL GGHDQPPQQN PISIPSQQNC  240
FHAAEAGKMA RIVERVEVEE EVESDMAEDS ESEMEESEEE VEEDTRKKQR ISTAVKRLRE  300
EATRVVEDVG KSVWEKKEWM KRKMLEIEEK KIGYEWEAVE MEKQRVKWMR YRSKKEREME  360
KAKLDNQRRR LETERMVLNL RRTEIELSEL QSSGKRVDLS SAKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap478332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0109270.0AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankAY0910280.0AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888966.10.0uncharacterized protein LOC9320839
TrEMBLD7L8U90.0D7L8U9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1033__AT3G10040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors