PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478296
Common NameARALYDRAFT_478296
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family S1Fa-like
Protein Properties Length: 71aa    MW: 7928.65 Da    PI: 10.7779
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA139.56.9e-44571268
    S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68
            +++k+e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlPPrkkkPvskkk+k+ek+kqGv+vP
  478296  5 FDGKIESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQVP 71
            6889**************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046895.6E-38971IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MAEEFDGKIE SKGLNPGLIV LLVIGGLLVT FLVGNFILYT YAQKNLPPRK KKPVSKKKMK  60
KEKMKQGVQV P
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap478296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806291e-101AF380629.1 Arabidopsis thaliana AT3g09731 mRNA, complete cds.
GenBankAK1189701e-101AK118970.1 Arabidopsis thaliana At3g09735 mRNA for unknown protein, complete cds, clone: RAFL21-30-H15.
GenBankAY0541291e-101AY054129.1 Arabidopsis thaliana AT3g09731 mRNA, complete cds.
GenBankAY0871861e-101AY087186.1 Arabidopsis thaliana clone 32612 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884751.26e-43DNA-binding protein S1FA3
SwissprotQ423371e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLD7L8C11e-41D7L8C1_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__997__AT3G09735.12e-42(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.15e-09S1FA-like DNA-binding protein