PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477944
Common NameARALYDRAFT_477944
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 455aa    MW: 48054.7 Da    PI: 7.9226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477944genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125176227
             -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
             +++ C +++rtG C yG+rC+F+H++
   477944 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76
             6899********************96 PP
2zf-CCCH37.25.1e-1298122327
              S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
              ++ C++f+rtGtCk+G++Ck++H++
   477944  98 HPVCQHFMRTGTCKFGASCKYHHPR 122
              789********************96 PP
3zf-CCCH37.53.8e-12145169226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ++++C++++rtG+Ck+G +C+F+H+
   477944 145 GEKECSYYLRTGQCKFGLTCRFNHP 169
              7899********************9 PP
4zf-CCCH406.3e-13299323226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ++++C++f+rtG Ck+G++C+++H+
   477944 299 DQPECQYFMRTGDCKFGSSCRYHHP 323
              689*********************9 PP
5zf-CCCH31.62.8e-10345370227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              + + C +f++ G+Ck+G+ C+F H++
   477944 345 GVAQCTHFSQHGICKFGPACRFDHSM 370
              6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394977IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44976IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-105176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61995123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-696122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-997122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5145170IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4149168IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854297325IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4303323IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695343371IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-8345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5346371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLEW TSHGGETGLE ASMWRLGLSG GGGESYPERP DEPDCIYYLR  60
TGVCGYGSRC RFNHPRDRGA VIGGVRGEAG ALPERMGHPV CQHFMRTGTC KFGASCKYHH  120
PRQGGGGGSV APVSLSYLGY PLRPGEKECS YYLRTGQCKF GLTCRFNHPV PLAVQGPPQH  180
QQQQQPQLQT IYPTLQSQSV PSSQQYGLVL TRPSLLPGSY LPSPYGPPMV LPPGMVPYSG  240
WNPYQASLSA MPSPGTQPSI GSSSVYGITP LSPSVTAYTG AYQSGPSSNT SKEFPQRPDQ  300
PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGLVLSSIGL PLRPGVAQCT HFSQHGICKF  360
GPACRFDHSM SSSLSYSPSA SSLTDMPVAP YPIGSSSLSG SSAPVSSSNE PTTEAVTAAA  420
VSTSMVSGLS RPEPAETSGD SASVSGSIEA KTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap477944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884577.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLD7L5G80.0D7L5G8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__645__AT3G06410.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]