PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477862
Common NameARALYDRAFT_477862
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 296aa    MW: 31982.9 Da    PI: 10.1191
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477862genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.21.5e-29136195258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +++YVN+KQy++I++RRq+Rak+++   +kkl++++rkpy+h+SRh hAlrRpRgsgGrF
     477862 136 STIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195
                78**********************9999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-31133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.959134198IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-24137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-21137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-21172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMQTVREGL FSAPQASWWT AFGSQPLAPE SLAGDSDSFA GVKVGSVGET GQGVDKQSNS  60
ATHLAFSLGD VKSPRLVPKP HGATFSMQSP CLELGFTQPP IYTKYPYGEQ QYYGVVSAYG  120
SQSRVMLPLT METEDSTIYV NSKQYHGIIR RRQSRAKAAA VLDQKKLSSR CRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNSEKSGTNA KKADGSMQIQ SQPKPQQSNS QNSEVVHPEN  240
GTMNLSNGLN VSGSEVTSMN YFLSSPVHSL GGMVMPSKWI AAAAGMDNGC SNFKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-16135196260HAPB protein
4g92_A3e-16135196260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap477862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888748.10.0nuclear transcription factor Y subunit A-2
RefseqXP_020888749.10.0nuclear transcription factor Y subunit A-2
RefseqXP_020888750.10.0nuclear transcription factor Y subunit A-2
SwissprotQ9M9X40.0NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLD7L4M50.0D7L4M5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__563__AT3G05690.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.10.0nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]