PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477666
Common NameARALYDRAFT_477666
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 362aa    MW: 41122.1 Da    PI: 8.4059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477666genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52101401128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgel 99 
             lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++     +e+
  477666  10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVAngegFHEN 111
             79****************************.89***************988899***************************************9855444455 PP

     NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
             +g+kk Lvfy+g+ pkg+kt+W+mheyrl
  477666 112 IGIKKALVFYRGKPPKGVKTNWIMHEYRL 140
             ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-617188IPR003441NAC domain
PROSITE profilePS5100559.90910188IPR003441NAC domain
PfamPF023654.8E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVANGEGFHE NIGIKKALVF  120
YRGKPPKGVK TNWIMHEYRL ADSLSPKRIS CSRSSSSEVN NNFGDRNLKS KEYSMRLDDW  180
VLCRIYKKSH ASLSSPDVAL VTSNQEHEEN DNEPFVERGT FLPNLQKDQP LKRQKSSCSF  240
SNLLDATDLT FLANFLNETP ENRSESDFSF MSGNFSNPDI YGNHYLGQKL PRLSSPTSET  300
SGVGNKRERL DFAEETINAS KKMMNTYSYN NNIDQMDHSM MQQPSFLNQE LLMSSHLQYQ  360
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-68919219172NAC domain-containing protein 19
3swm_B2e-68919219172NAC domain-containing protein 19
3swm_C2e-68919219172NAC domain-containing protein 19
3swm_D2e-68919219172NAC domain-containing protein 19
3swp_A2e-68919219172NAC domain-containing protein 19
3swp_B2e-68919219172NAC domain-containing protein 19
3swp_C2e-68919219172NAC domain-containing protein 19
3swp_D2e-68919219172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap477666
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274170.0AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22.
GenBankBT0059850.0BT005985.1 Arabidopsis thaliana At3g04070 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887019.10.0NAC transcription factor 47
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLD7L2130.0D7L213_ARALL; ANAC047
STRINGfgenesh2_kg.3__367__AT3G04070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]