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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477445 | ||||||||
Common Name | ARALYDRAFT_477445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 359aa MW: 39752.9 Da PI: 7.4509 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.3 | 1e-32 | 74 | 192 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.............. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++ ++++s + ++ + 477445 74 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSifNHHHSFLNLGQRPGQdptqlgfkingcve 176 689*************************************************************999998887766666555553333356677777777764 PP TCP 89 ...kaaksaakskksqksaa 105 + + +++++ + 477445 177 estT----TSREANNKEKGE 192 3221....222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.314 | 76 | 134 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.7E-29 | 76 | 181 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNIVSWKDAN DEVSGGTTRR REGEVEEDQE EAQVRATSGK TVIKKPPTSI SSSSSSSSWM 60 KSKDPRIVRV SRAFGGKDRH SKVCTLRGLR DRRVRLSVPT AIQLYDLQER LGVDQPSKAV 120 DWLLDAAKEE IDELPPLPIS PENFSIFNHH HSFLNLGQRP GQDPTQLGFK INGCVEESTT 180 TSREANNKEK GENDVVFTNN HHVGSYGTYH NMEHHHHHHQ HLSLQADYHN HQHQLHSLVP 240 FPSQILVCPM TTSTTATIQS LFPSSPSAGS GTMETLDLRQ MVSHFQMPLM GNSSSSSSQN 300 ISTLYSLLHG SNSNNGGRDI NNRMSSVQFN RANSTTTANM SRHLGSESST SRGSDHHM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 81 | 135 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 81 | 135 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477445 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB014465 | 0.0 | AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds. | |||
GenBank | ATAC009755 | 0.0 | AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence. | |||
GenBank | ATAC011664 | 0.0 | AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence. | |||
GenBank | BT001982 | 0.0 | BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds. | |||
GenBank | BT008839 | 0.0 | BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886906.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_020886907.1 | 0.0 | transcription factor TCP13 | ||||
Swissprot | Q9S7W5 | 0.0 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | D7LAL3 | 0.0 | D7LAL3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__146__AT3G02150.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 0.0 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 477445 |
Entrez Gene | 9320372 |
Publications ? help Back to Top | |||
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