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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477299 | ||||||||
Common Name | ARALYDRAFT_477299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 29143.1 Da PI: 5.0001 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.8e-23 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie ++nrq+tfskR++g++KKA+ELS+LCd++ a+++fs++++l +s 477299 9 KRIEKNTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 58 79*****************************************9997765 PP | |||||||
2 | K-box | 19.5 | 3.9e-08 | 125 | 193 | 11 | 79 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+l+qe+ +L+++++ ++e+R++ + + s++e++ e++L + l+++ +++++ll+++ e 477299 125 NTDVEELEQEVCRLQQQLQISEEELRKFEPDPMRFTSMEEIEACETHLINTLTSVVQRREHLLRKSCEA 193 567899*********************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.086 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-26 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRVKLELKR IEKNTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ 60 TRIEDVLARY INLPDQEREN AIVFPDQSKR QAIQNKEYLL RTLEKLKIED DMALQINEPR 120 PEAINTDVEE LEQEVCRLQQ QLQISEEELR KFEPDPMRFT SMEEIEACET HLINTLTSVV 180 QRREHLLRKS CEAPSNQQSM QGILLNDIVE DWGSEAEPKQ AHVMANSAHQ SNQLSYDLLL 240 QGSNSSSNQN PK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 8e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 8e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 8e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477299 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012128 | 0.0 | BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889727.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q1PFC2 | 1e-110 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | D7KXQ3 | 0.0 | D7KXQ3_ARALL; Transcription factor | ||||
STRING | fgenesh2_kg.2__2429__AT1G77950.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 1e-153 | AGAMOUS-like 67 |
Link Out ? help Back to Top | |
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Phytozome | 477299 |
Entrez Gene | 9323927 |
Publications ? help Back to Top | |||
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