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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
476700 |
Common Name | ARALYDRAFT_476700 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
SRS |
Protein Properties |
Length: 345aa MW: 38399.8 Da PI: 7.0372 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
476700 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 227.8 | 2e-70 | 117 | 283 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalsstklss 93
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re + + sal++t++++
476700 117 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggnndddkdhSGGAGSALANTRVVN 219
7899**********************************************************999977777776666666666666657788999******** PP
DUF702 94 aeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
a+s++ le+s+ lP+ev+s+avfrcv+vss++d +++e+aYqtav+igGhvfkGiLydqG+++
476700 220 ANSNSGLEVSQqLPQEVNSPAVFRCVKVSSIEDdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 283
*****9998766*******************98544567***********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDN SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE 60 HQQQQHQQRQ HASAPANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG 120 MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LASLQHHSAS 180 SRETQNAKRL REASGGNNDD DKDHSGGAGS ALANTRVVNA NSNSGLEVSQ QLPQEVNSPA 240 VFRCVKVSSI EDDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHNHHLN LLASTATTTN 300 VEETATKTVT GNNNNGLMLD PSSLYPAQLN SFIAGTPFFT PPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY800620 | 0.0 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. |
GenBank | AY924730 | 0.0 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |