PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TALE

Protein Properties

Length: 523aa MW: 59404.6 Da PI: 6.566

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
476691	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1.1e-09	366	403	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ L+k++gL+++qV +WF N R + 476691 366 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 403 665559******************************88 PP
2	BELL	125.4	2.1e-40	229	300	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi 476691 229 ERQELQSKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 300 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-52	162	298	IPR006563	POX domain
Pfam	PF07526	1.1E-47	168	296	IPR006563	POX domain
PROSITE profile	PS50071	12.066	344	407	IPR001356	Homeobox domain
CDD	cd00086	3.14E-11	347	408	No hit	No description
SMART	SM00389	1.9E-9	347	411	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-17	348	415	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-28	350	413	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	364	403	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MAVYYPNSVG MQSLYQESIY LNEQQQQQAS SSSAASFSEI VSGDVRNNEM VFIPPTSDVA 60 VNGNVTVSSN DLSFHGGGLS LSLGNQIQSA VSVSPFQYHY QNLSNQLSYN NLNPPTMSDE 120 NGKSLSGHHQ QHHHSDQMIP SSGYNNNGNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL 180 LDEVVSVRKD LKLGNKKMKN DKGQDFQNGS SDNITEDEKS QSQELSPSER QELQSKKSKL 240 LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI 300 QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI 360 LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA RVRLWKPMIE EMYKEEFGDS 420 AELLSNSNQD TNKMQETSQL KHEDSSSSQQ QNQGNNNIPY TSDAEENLVF ADPKPDRATT 480 GDYDSLMNYH GFGIDDYNRY VGLGNQQDGR YSNPHQLHDF VV*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MAVYYPNSVG MQSLYQESIY LNEQQQQQAS SSSAASFSEI VSGDVRNNEM VFIPPTSDVA  60
VNGNVTVSSN DLSFHGGGLS LSLGNQIQSA VSVSPFQYHY QNLSNQLSYN NLNPPTMSDE  120
NGKSLSGHHQ QHHHSDQMIP SSGYNNNGNG VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL  180
LDEVVSVRKD LKLGNKKMKN DKGQDFQNGS SDNITEDEKS QSQELSPSER QELQSKKSKL  240
LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI  300
QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI  360
LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA RVRLWKPMIE EMYKEEFGDS  420
AELLSNSNQD TNKMQETSQL KHEDSSSSQQ QNQGNNNIPY TSDAEENLVF ADPKPDRATT  480
GDYDSLMNYH GFGIDDYNRY VGLGNQQDGR YSNPHQLHDF VV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	353	411	5	63	Homeobox protein Meis2
3k2a_B	1e-15	353	411	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	476691

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353093	0.0	AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBank	AY085278	0.0	AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBank	AY598452	0.0	AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889947.1	0.0	BEL1-like homeodomain protein 3
Refseq	XP_020889948.1	0.0	BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	0.0	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	D7KSP0	0.0	D7KSP0_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__1821__AT1G75410.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	0.0	BEL1-like homeodomain 3

Link Out ? help Back to Top
Phytozome	476691
Entrez Gene	9323658

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]