PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 476679 | ||||||||
Common Name | ARALYDRAFT_476679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 47239.5 Da PI: 8.2748 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.8e-12 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f+r G C+yG++C+F H++ 476679 3 KELCRNFQR-GSCRYGENCRFLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-8 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.15 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQQ QPQQQQQQQN SSNPFGFGVQ 60 GGGSSRPNQF QPFENTWSRT ASTPTGGGGA AAAQQAGKQT QPADHKCTDP AACKRVMQDD 120 FKNERPMWKL TCYGHWKYFP CDVTGDISYE ELRAMAYEEA KRGIPLQSIV ERERNLQNSK 180 IAEFENFLRN PYKGSVTANQ SPFAATTPSI FPPTGQINSS PPGFSGFNQQ TAFANTNTGG 240 LSSSGPPNAF ASFNQQSNNQ QTTFPNTNAG GVSSSGPPNP FASFNQQSNN QQTAFPNTNA 300 GGLSSSGPPN ASASFNKQPN AFSVNTPQPV PSGPSGFQTH PSTTFKPASF GPGPGLATTP 360 QNNNIFGPST SAPAPNTSQN NQAAFNFNVP VASFTAPAVD TTNTSSGTEL QIGDPVDSSI 420 WLKEKWNPGE IPEQAPPDAF V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 476679 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014744 | 0.0 | BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891135.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
Swissprot | Q9FWS3 | 0.0 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | D7KSN0 | 0.0 | D7KSN0_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | fgenesh2_kg.2__1809__AT1G75340.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 476679 |
Entrez Gene | 9323652 |