PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 47583
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 329aa    MW: 36450 Da    PI: 11.2388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
47583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r rW++eEde+l+ + +++G++ W+tIar+mg gRt+ qc  rw+ +l
            47583 23 RERWSEEEDEKLKTLKERYGSR-WATIAREMG-GRTDQQCMGRWRRHL 68
                     78********************.*********.************986 PP
2Myb_DNA-binding39.31.5e-1274117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+W  +Edell  +  ++G++ W+ I + ++ gRt+ qc+ rw++
            47583  74 RGAWARDEDELLCGLYDEYGPR-WSFICQSVP-GRTAQQCRARWFQ 117
                      89******************99.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.54117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-6129IPR009057Homeodomain-like
PROSITE profilePS5129424.3241872IPR017930Myb domain
SuperFamilySSF466896.97E-2520115IPR009057Homeodomain-like
SMARTSM007174.1E-162270IPR001005SANT/Myb domain
CDDcd001671.01E-132568No hitNo description
PfamPF139211.0E-162685No hitNo description
Gene3DG3DSA:1.10.10.605.0E-223076IPR009057Homeodomain-like
PROSITE profilePS5129414.08873123IPR017930Myb domain
SMARTSM007172.1E-973121IPR001005SANT/Myb domain
CDDcd001675.16E-876118No hitNo description
Gene3DG3DSA:1.10.10.604.3E-1577116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGTRSGQQCA QRWRHKVNPG IRRERWSEEE DEKLKTLKER YGSRWATIAR EMGGRTDQQC  60
MGRWRRHLDP TVTRGAWARD EDELLCGLYD EYGPRWSFIC QSVPGRTAQQ CRARWFQVDG  120
KPREERDHRP SRRQSPVETS SHGPAEDHPA RRFSDHEGLV TRTSIDSMPM ASLSPTPVAE  180
KRPFSHILAE VSARTTQKTG SLIESASIAT ALGRASPATL SKRKQVSTAL DPMSLWRDVG  240
GTKAVGKRKR GRPSKTVDAP RSPMARLSVQ SPRASSVYAP RTRARASTAS ASSKSTPHSS  300
VIGRSTEEDK LSVLLGVALG RSDGAAPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-2131158151MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-2131158151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005940.0CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421243.10.0predicted protein
TrEMBLA4S7B60.0A4S7B6_OSTLU; Uncharacterized protein
STRINGABO995360.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-19myb domain protein 3r-4